Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CDG57_RS01865 Genome accession   NZ_CP028800
Coordinates   339287..341419 (+) Length   710 a.a.
NCBI ID   WP_171488084.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCHAJ59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334287..346419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS01845 (CDG57_01855) pilM 336259..337317 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  CDG57_RS01850 (CDG57_01860) pilN 337317..337961 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  CDG57_RS01855 (CDG57_01865) pilO 337958..338698 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG57_RS01860 (CDG57_01870) pilP 338698..339225 (+) 528 WP_075696027.1 pilus assembly protein PilP Machinery gene
  CDG57_RS01865 (CDG57_01875) pilQ 339287..341419 (+) 2133 WP_171488084.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG57_RS01870 (CDG57_01880) aroK 341439..341999 (+) 561 WP_087539634.1 shikimate kinase AroK -
  CDG57_RS01875 (CDG57_01885) aroB 342020..343102 (+) 1083 WP_087539632.1 3-dehydroquinate synthase -
  CDG57_RS01880 (CDG57_01890) - 343119..343997 (+) 879 WP_087539630.1 hypothetical protein -

Sequence

Protein


Download         Length: 710 a.a.        Molecular weight: 77321.66 Da        Isoelectric Point: 8.1635

>NTDB_id=287790 CDG57_RS01865 WP_171488084.1 339287..341419(+) (pilQ) [Acinetobacter junii strain WCHAJ59]
MNHAFRQFSMAAVAIAISQVASAQVGITNIVPMNLGDQGTEIRVMFNGLPPQPQAYQLEQPARLILDFDKAQQNLKQTSI
PVSTNEASSINIAADDQRARLIVNLKDSGAFTTRVEGNTFVLKINSAKPTLISNPTVATRQVQQGVSNIGFQRGNQGEGL
VVIDLLGGNTPVDVQQQGSKIVVRTLGNKIPTHLARRLNTNDFATPVASVDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPAKAKAQTYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKN
LDKRRNGNVIWIAPVSELIKAEEEEAKAIAQSVKLAPLQTEYIRLSYAKAADIEKLITQGKNSSNNNNSSGMANNDTLVD
GLLSPRGTVSTDPRTNTVIINDTSQKIDQIRKMVDLLDVSIKQVMVEARIVRASTDFSKEMGVKWGILSQGITRNNDLLV
GGSDTTLWNLRKPEKNSETGGYKYEIERPQNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVL
TADKQAAKVVSGTQVPYQSVTGTGGNQTASTSFKDVLLSLDVTPSITPEGKVQMRLNISSDSIGDTAPNGELILNKNQID
TNVLVDNGETVVLGGIFEQTNVNRQTKVPFLGDLPYVGKLFRRDSKTENKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2133 bp        

>NTDB_id=287790 CDG57_RS01865 WP_171488084.1 339287..341419(+) (pilQ) [Acinetobacter junii strain WCHAJ59]
ATGAATCATGCATTCCGTCAATTTTCTATGGCTGCGGTTGCAATTGCTATTTCGCAAGTAGCTTCGGCACAGGTGGGTAT
TACAAATATTGTGCCGATGAACTTGGGGGATCAGGGTACTGAAATCAGAGTCATGTTTAATGGTTTGCCTCCTCAACCAC
AGGCCTATCAACTTGAGCAGCCTGCTCGTTTAATTTTAGATTTTGATAAGGCTCAGCAGAACTTAAAGCAAACGTCTATT
CCTGTTTCAACCAATGAGGCAAGTTCCATCAATATAGCTGCAGATGATCAGCGTGCTCGTTTAATCGTGAATTTAAAAGA
CTCGGGTGCTTTCACAACCCGTGTTGAAGGTAATACTTTTGTTTTAAAAATAAATTCTGCAAAACCAACATTAATCAGTA
ATCCTACGGTTGCTACTCGACAAGTTCAACAAGGTGTTTCCAATATTGGTTTTCAAAGAGGGAATCAAGGTGAGGGGTTA
GTTGTTATCGATTTATTGGGAGGTAATACACCAGTAGATGTACAACAACAAGGAAGTAAAATTGTTGTTCGTACTCTTGG
AAATAAAATCCCAACGCACTTGGCGCGTCGTTTAAATACCAATGACTTTGCTACCCCTGTTGCCAGTGTGGATGCCTACA
ATGACAAAGGAAATGGTGTGATCACCATTCAATCTGCGGGGAGCTATGAATATATGGCTTATCAGGCAGAAAATAAGTTA
ACGATTAGTTTAAAGCGTCCAGAAGATAAATCCCCAGCAAAAGCGAAAGCTCAAACCTACACGGGCAATAAAATCTCTTT
AGATTTCCAGGATATTGAAGTTCGCCGTGTCTTACAACTTCTTGCAGATTTCACTGGCATCAATATGGTGGCAGCTGATA
CCGTACAAGGTAATATTACGCTGCGTTTGAAAGATGTGCCTTGGGATCAGGCTCTGGATATTGTTCTAAAAACCAAAAAT
CTGGACAAACGCCGTAATGGAAATGTGATCTGGATTGCACCTGTTTCTGAGTTAATTAAGGCAGAAGAAGAAGAAGCTAA
AGCGATTGCACAAAGTGTTAAATTAGCACCTCTTCAAACTGAATATATTCGCTTGAGCTATGCAAAAGCGGCTGATATTG
AAAAACTGATTACGCAAGGTAAAAATAGTAGCAATAACAACAATTCATCAGGTATGGCGAATAATGATACTTTGGTAGAT
GGTCTGTTAAGTCCACGTGGTACAGTATCAACTGATCCGCGTACCAATACTGTCATTATCAATGATACTTCGCAGAAAAT
TGATCAAATTCGTAAAATGGTCGATTTGCTTGATGTCTCCATCAAACAAGTGATGGTAGAGGCTCGTATTGTGCGTGCAA
GTACCGATTTTAGTAAAGAGATGGGGGTGAAGTGGGGCATCTTGTCACAAGGGATCACCCGAAATAATGACTTGCTAGTA
GGTGGTAGTGATACTACCTTATGGAACTTACGTAAGCCTGAAAAGAATTCCGAAACAGGTGGTTATAAATATGAAATTGA
ACGTCCACAAAACTTAAATGTGGATTTAGGTGTCACTAGTCAAGGTGCCAGTCGTATTGCATTTGGCTTAATTAGCTTGT
CTGACTTTATGTTGGATTTAGAGCTTTCAGCTGTACAGGCAGATGGTTATGGTGAGGTGATTTCGACTCCTAAAGTCCTC
ACTGCTGATAAACAAGCGGCTAAAGTGGTTTCTGGTACACAGGTTCCTTATCAATCTGTTACAGGAACAGGCGGAAACCA
GACTGCCAGTACTTCATTTAAAGATGTATTACTGAGTTTGGATGTAACCCCAAGTATTACGCCTGAAGGTAAAGTACAGA
TGAGATTGAATATTTCAAGTGATTCTATTGGAGATACTGCACCAAATGGCGAGTTAATCCTAAATAAGAATCAAATTGAT
ACCAATGTTTTGGTTGATAATGGGGAAACAGTAGTGCTAGGTGGGATTTTTGAGCAGACGAATGTTAATCGTCAAACAAA
AGTACCTTTCCTTGGGGATTTACCATATGTGGGTAAATTATTCCGTCGTGATTCGAAAACTGAAAATAAACGTGAACTAC
TTATTTTTGTAACCCCGAGAATTGTTAATGACACCTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-122)

Secretin and TonB N terminus short domain (STN)

(292-334)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-443)

Bacterial type II and III secretion system protein (Secretin)

(544-702)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.928

100

0.777
  pilQ Acinetobacter baumannii strain A118

75.928

100

0.777
  comQ Acinetobacter baylyi ADP1

74.687

100

0.756
  pilQ Pseudomonas aeruginosa PAK

40.286

98.592

0.397
  pilQ Legionella pneumophila strain ERS1305867

38.187

94.789

0.362
  pilQ Legionella pneumophila strain Lp02

38.187

94.789

0.362

Multiple sequence alignment