Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   CDG57_RS01855 Genome accession   NZ_CP028800
Coordinates   337958..338698 (+) Length   246 a.a.
NCBI ID   WP_075696026.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCHAJ59     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332958..343698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDG57_RS01840 (CDG57_01850) ponA 333517..336096 (-) 2580 WP_087539638.1 penicillin-binding protein PBP1a -
  CDG57_RS01845 (CDG57_01855) pilM 336259..337317 (+) 1059 WP_004951546.1 pilus assembly protein PilM Machinery gene
  CDG57_RS01850 (CDG57_01860) pilN 337317..337961 (+) 645 WP_004909633.1 PilN domain-containing protein Machinery gene
  CDG57_RS01855 (CDG57_01865) pilO 337958..338698 (+) 741 WP_075696026.1 type 4a pilus biogenesis protein PilO Machinery gene
  CDG57_RS01860 (CDG57_01870) pilP 338698..339225 (+) 528 WP_075696027.1 pilus assembly protein PilP Machinery gene
  CDG57_RS01865 (CDG57_01875) pilQ 339287..341419 (+) 2133 WP_171488084.1 type IV pilus secretin PilQ family protein Machinery gene
  CDG57_RS01870 (CDG57_01880) aroK 341439..341999 (+) 561 WP_087539634.1 shikimate kinase AroK -
  CDG57_RS01875 (CDG57_01885) aroB 342020..343102 (+) 1083 WP_087539632.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27775.32 Da        Isoelectric Point: 4.6196

>NTDB_id=287788 CDG57_RS01855 WP_075696026.1 337958..338698(+) (pilO) [Acinetobacter junii strain WCHAJ59]
MSQEELNELNQDVAVKKKKMTVEQFFQQFNTLDMNNYGSWPLSVKVTCWIFVFLAVLALGYFVVIKSQLERIANEEAKEQ
SLLNEFREKDSKLRNLQRYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLENEVKQEFFIEQPI
SIEATGDYHAFGAFATGIAALPRIVTLHDFTVEASQDTTKKSDIPVVNYSVKAKTYRYVGADDAANTEVGAAVPPQNNPP
SQGGTN

Nucleotide


Download         Length: 741 bp        

>NTDB_id=287788 CDG57_RS01855 WP_075696026.1 337958..338698(+) (pilO) [Acinetobacter junii strain WCHAJ59]
ATGAGTCAAGAAGAATTAAATGAACTCAATCAAGATGTTGCTGTAAAGAAAAAGAAAATGACAGTAGAGCAATTCTTTCA
GCAATTTAATACGCTTGATATGAATAATTACGGTAGCTGGCCGCTATCTGTAAAAGTGACATGTTGGATTTTTGTTTTTT
TAGCTGTTTTAGCGCTTGGTTACTTTGTTGTTATTAAATCTCAGCTTGAGCGTATTGCTAATGAAGAGGCTAAAGAGCAA
AGTTTATTGAATGAATTTAGAGAAAAAGACTCTAAATTGCGTAATTTGCAGCGTTACCAAGCTCAGTTACAAGAAATGGA
AGCTAATTTTAATCAGCAACTAGAACAATTGCCGAAAGAAACTGAGATTCCAAGTTTGGTTGAAGATATTAACTTGACTG
GTGTGAATTCGGGGTTGAAGTTTAAGAATATTCGCCTAGAAAATGAGGTTAAGCAAGAATTCTTTATTGAACAACCGATT
AGTATTGAAGCAACTGGCGATTATCATGCATTTGGAGCATTTGCTACGGGTATTGCGGCATTGCCTCGAATTGTAACTTT
ACATGATTTCACGGTTGAAGCATCACAAGATACGACGAAGAAGTCAGATATTCCTGTTGTAAATTACTCCGTTAAGGCAA
AGACCTACCGTTATGTGGGTGCTGATGATGCAGCAAATACTGAGGTTGGAGCGGCGGTACCTCCTCAGAATAATCCACCT
AGTCAAGGAGGAACTAACTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

72.065

100

0.724
  comO Acinetobacter baylyi ADP1

73.043

93.496

0.683

Multiple sequence alignment