Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BCER98_RS12320 Genome accession   NC_009674
Coordinates   2524630..2525868 (-) Length   412 a.a.
NCBI ID   WP_012094872.1    Uniprot ID   A7GRB0
Organism   Bacillus cytotoxicus NVH 391-98     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2519630..2530868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCER98_RS12300 (Bcer98_2428) spoVS 2519973..2520233 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BCER98_RS12305 (Bcer98_2429) - 2520381..2521175 (-) 795 WP_012094869.1 TIGR00282 family metallophosphoesterase -
  BCER98_RS12310 (Bcer98_2430) rny 2521390..2522952 (-) 1563 WP_012094870.1 ribonuclease Y -
  BCER98_RS12315 (Bcer98_2431) recA 2523457..2524488 (-) 1032 WP_012094871.1 recombinase RecA Machinery gene
  BCER98_RS12320 (Bcer98_2432) cinA 2524630..2525868 (-) 1239 WP_012094872.1 competence/damage-inducible protein A Machinery gene
  BCER98_RS12325 (Bcer98_2433) pgsA 2525889..2526467 (-) 579 WP_012094873.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BCER98_RS12330 (Bcer98_2434) - 2526531..2527457 (-) 927 WP_012094874.1 RodZ domain-containing protein -
  BCER98_RS12335 (Bcer98_2435) - 2527479..2528264 (-) 786 WP_012094875.1 DUF3388 domain-containing protein -
  BCER98_RS12340 (Bcer98_2436) - 2528402..2528650 (-) 249 WP_012094876.1 DUF3243 domain-containing protein -
  BCER98_RS12345 (Bcer98_2437) ymfI 2528726..2529439 (-) 714 WP_041810481.1 elongation factor P 5-aminopentanone reductase -
  BCER98_RS12350 (Bcer98_2438) yfmH 2529575..2530861 (-) 1287 WP_012094878.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45771.23 Da        Isoelectric Point: 5.9811

>NTDB_id=28647 BCER98_RS12320 WP_012094872.1 2524630..2525868(-) (cinA) [Bacillus cytotoxicus NVH 391-98]
MNAEIIAVGTELLLGQITNTNAKFLSEKLASIGINVYYHTVVGDNTRRLQEAIRTAEKRANILIFTGGLGPTKDDLTKET
IASIVKEDLVYDEAALTSIREYFNRTGREFTENNKKQALVLKGSTVFANNHGMAPGMGLHKNEKVYILLPGPPKEMQPMY
NSYVDPFLRNVTTGEHIYSRVLRFFGIGESQLEVKVQDLIDNQTNPTIAPLASDGEVTLRLTAKHQNVEQAELLIQQVEH
LILERVGEFFYGYNEDFLHHKAIELLKKKGFTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHILQVPEET
LQTAGAVSEECARYLAENVKLLLQSDIGISFTGVAGPDASENKEPGTVFIGLAIKDEPTIVFPLCLSGSRQQIRERTVKY
GFYHLYKKLEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=28647 BCER98_RS12320 WP_012094872.1 2524630..2525868(-) (cinA) [Bacillus cytotoxicus NVH 391-98]
ATGAATGCCGAAATTATTGCGGTTGGAACAGAATTATTATTGGGGCAAATTACAAATACAAATGCGAAGTTTTTATCCGA
AAAATTAGCTTCTATTGGAATAAATGTGTATTATCATACTGTAGTAGGTGATAATACACGTCGGCTACAAGAGGCTATTC
GCACAGCTGAAAAACGTGCAAACATATTGATTTTTACTGGCGGACTCGGACCAACAAAAGATGATTTAACGAAAGAAACC
ATTGCATCGATTGTTAAGGAAGACCTTGTTTATGATGAAGCGGCACTAACATCAATTCGTGAATATTTTAATCGAACGGG
TCGTGAGTTCACAGAGAATAATAAGAAACAAGCACTCGTTTTGAAGGGTTCAACTGTATTTGCAAATAATCACGGTATGG
CGCCAGGCATGGGATTACATAAAAATGAAAAAGTGTATATTTTATTGCCAGGTCCACCGAAAGAAATGCAACCAATGTAT
AATAGCTATGTAGATCCATTCTTGCGCAATGTAACAACTGGTGAACATATTTATTCTCGTGTCCTTCGTTTTTTCGGTAT
TGGTGAATCGCAGTTAGAAGTAAAAGTACAAGATTTAATTGACAACCAAACGAATCCGACAATTGCACCGCTAGCTTCTG
ATGGAGAGGTAACGTTGCGATTAACCGCGAAACATCAGAATGTAGAGCAAGCGGAGTTATTAATTCAGCAGGTAGAACAT
TTAATCTTAGAGAGAGTAGGCGAATTTTTTTACGGCTACAATGAAGATTTCCTTCACCATAAGGCAATTGAGTTATTGAA
GAAAAAAGGTTTCACTCTAGCCTGTGCTGAAAGTTTAACAGGCGGTCTTTTTGGCAATCAAGTAACGGAAAATGCTGGTG
TGTCTTCTGTTTTTAAAGGTGGCGTAATTTGCTATCACAATGATGTAAAACAGCATATTTTACAAGTTCCTGAAGAGACT
TTACAAACGGCAGGTGCGGTGAGTGAAGAATGTGCGCGTTATCTTGCTGAAAATGTAAAATTACTTTTACAATCGGATAT
TGGAATTAGTTTTACGGGGGTCGCAGGACCGGATGCTTCAGAAAACAAAGAACCTGGAACTGTATTTATCGGTTTAGCAA
TCAAAGATGAACCGACAATAGTTTTTCCGCTTTGTTTAAGTGGGAGTCGTCAGCAAATTCGTGAACGTACTGTGAAATAT
GGATTTTATCATTTATACAAAAAGCTAGAAGAGATGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7GRB0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.829

99.515

0.566
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae TIGR4

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.062

100

0.468
  cinA Streptococcus pneumoniae Rx1

46.062

100

0.468
  cinA Streptococcus pneumoniae D39

45.823

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.585

100

0.464
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.114

91.505

0.376

Multiple sequence alignment