Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   EGY18_RS19690 Genome accession   NZ_CP033771
Coordinates   4139838..4140362 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain FDAARGOS_532     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4134838..4145362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EGY18_RS19675 (EGY18_19605) aroB 4135954..4137060 (-) 1107 WP_003107839.1 3-dehydroquinate synthase -
  EGY18_RS19680 (EGY18_19610) aroK 4137110..4137628 (-) 519 WP_003095833.1 shikimate kinase AroK -
  EGY18_RS19685 (EGY18_19615) pilQ 4137640..4139784 (-) 2145 WP_023083249.1 type 4a pilus secretin PilQ Machinery gene
  EGY18_RS19690 (EGY18_19620) comL/pilP 4139838..4140362 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  EGY18_RS19695 (EGY18_19625) pilO 4140359..4140982 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  EGY18_RS19700 (EGY18_19630) pilN 4140979..4141575 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  EGY18_RS19705 (EGY18_19635) pilM 4141575..4142639 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  EGY18_RS19710 (EGY18_19640) - 4142824..4145295 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=284713 EGY18_RS19690 WP_003095836.1 4139838..4140362(-) (comL/pilP) [Pseudomonas aeruginosa strain FDAARGOS_532]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=284713 EGY18_RS19690 WP_003095836.1 4139838..4140362(-) (comL/pilP) [Pseudomonas aeruginosa strain FDAARGOS_532]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGGGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment