Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C7Y67_RS16605 Genome accession   NZ_CP028342
Coordinates   3348512..3349624 (+) Length   370 a.a.
NCBI ID   WP_108745132.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate R13     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3343512..3354624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7Y67_RS16585 (C7Y67_16580) rsmB 3344432..3345715 (-) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C7Y67_RS16590 (C7Y67_16585) fmt 3345796..3346743 (-) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  C7Y67_RS16595 (C7Y67_16590) def 3346777..3347295 (-) 519 WP_005461416.1 peptide deformylase -
  C7Y67_RS16600 (C7Y67_16595) - 3347434..3348528 (+) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  C7Y67_RS16605 (C7Y67_16600) dprA 3348512..3349624 (+) 1113 WP_108745132.1 DNA-processing protein DprA Machinery gene
  C7Y67_RS16610 (C7Y67_16605) - 3349627..3350106 (+) 480 WP_005461440.1 DUF494 family protein -
  C7Y67_RS16615 (C7Y67_16610) - 3350185..3350754 (+) 570 WP_069494613.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  C7Y67_RS16620 (C7Y67_16615) - 3350818..3351951 (-) 1134 WP_029838711.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  C7Y67_RS16625 (C7Y67_16620) purE 3351956..3352441 (-) 486 WP_005497410.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  C7Y67_RS16630 (C7Y67_16625) - 3352641..3353198 (+) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  C7Y67_RS16635 (C7Y67_16630) hemF 3353246..3354163 (+) 918 WP_108745133.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39897.58 Da        Isoelectric Point: 6.4133

>NTDB_id=284277 C7Y67_RS16605 WP_108745132.1 3348512..3349624(+) (dprA) [Vibrio parahaemolyticus isolate R13]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLAQRVAENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=284277 C7Y67_RS16605 WP_108745132.1 3348512..3349624(+) (dprA) [Vibrio parahaemolyticus isolate R13]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGCTTAGCGCAGCGAGTAGCAGAGAATGGAGCACTGGTTTCTGAGTTTCGTCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTTGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.865

100

0.849
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Haemophilus influenzae Rd KW20

46.588

91.081

0.424
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

38.462

100

0.405
  dprA Neisseria meningitidis MC58

38.462

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.598

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

36.34

100

0.381

Multiple sequence alignment