Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C7M42_RS08790 Genome accession   NZ_CP028249
Coordinates   1813517..1814758 (-) Length   413 a.a.
NCBI ID   WP_053906123.1    Uniprot ID   -
Organism   Pediococcus acidilactici strain SRCM102732     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1808517..1819758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M42_RS08780 (C7M42_01784) rny 1810463..1812022 (-) 1560 WP_053906124.1 ribonuclease Y -
  C7M42_RS08785 (C7M42_01786) recA 1812291..1813346 (-) 1056 WP_002832084.1 recombinase RecA Machinery gene
  C7M42_RS08790 (C7M42_01787) cinA 1813517..1814758 (-) 1242 WP_053906123.1 competence/damage-inducible protein A Machinery gene
  C7M42_RS08795 (C7M42_01788) pgsA 1814896..1815477 (-) 582 WP_053906122.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C7M42_RS08800 (C7M42_01789) - 1815490..1816368 (-) 879 WP_053906121.1 helix-turn-helix domain-containing protein -
  C7M42_RS08805 (C7M42_01790) ymfI 1816411..1817136 (-) 726 WP_002832088.1 elongation factor P 5-aminopentanone reductase -
  C7M42_RS08810 (C7M42_01791) yfmH 1817153..1818445 (-) 1293 WP_053906120.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  C7M42_RS08815 (C7M42_01792) yfmF 1818445..1819704 (-) 1260 WP_053906119.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44891.16 Da        Isoelectric Point: 5.3325

>NTDB_id=283711 C7M42_RS08790 WP_053906123.1 1813517..1814758(-) (cinA) [Pediococcus acidilactici strain SRCM102732]
MKAEIISVGTEILLGEITDTNAVYLSQQLAQLGIDVYHQATVGDNSTTMKETLEIASKRSDLVIAIGGLGPTEDDITKPT
LAAFLGEELVVDDRALEKVHEHFTKQGRPITPNNERQALLLKGSRPVHNPNGLAIGLFATTPTTDYLVLPGPPSEFKPMV
NQEVLPLLKERYSLDKTIQSKTLHFVGVGEADLATRVDDVIRRQSNPTIALYFKPTDVTIRLTAKADSKDEAEQMLEKTK
AEILARAGDYYYAEGEQVAFPDFVVQELIKRKLTLTAAESLTGGAFQNQLVKTAGTSAVFSGGFVTYSDEVKTSLLGVRP
ETIAQYTVVSRPVAEEMARGARKQLGTDLAISFTGVAGPEGLEGHAPGDVWIGLALPDGSTVAKGFHFSGNREKIRHLAV
MNGFRMIWEQVVK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=283711 C7M42_RS08790 WP_053906123.1 1813517..1814758(-) (cinA) [Pediococcus acidilactici strain SRCM102732]
ATGAAGGCGGAAATTATTTCAGTTGGTACCGAGATTTTGTTAGGTGAAATCACCGATACTAACGCCGTTTATTTGAGTCA
GCAATTAGCCCAGCTAGGAATTGACGTTTATCACCAAGCAACGGTGGGCGATAATTCAACTACCATGAAGGAAACGCTGG
AAATTGCCAGCAAGCGCAGCGACTTAGTGATCGCCATTGGGGGATTAGGACCGACGGAAGATGATATTACTAAACCAACG
TTGGCCGCGTTTTTAGGTGAAGAATTAGTGGTTGACGACCGGGCGCTAGAAAAGGTGCACGAGCACTTTACTAAGCAGGG
ACGTCCCATCACTCCCAATAATGAACGGCAGGCGTTGTTATTAAAAGGGAGTCGTCCTGTGCACAATCCCAACGGGTTAG
CGATTGGCTTGTTTGCCACTACTCCGACGACCGATTACTTGGTTTTACCAGGACCGCCTAGTGAATTTAAGCCAATGGTT
AACCAGGAAGTGCTTCCTTTGTTAAAAGAGCGGTACTCGTTGGATAAAACAATTCAATCCAAAACGTTACACTTCGTAGG
GGTTGGGGAAGCCGACTTGGCGACCCGGGTGGATGACGTGATCAGACGACAGAGTAATCCTACAATCGCGTTATACTTCA
AACCGACTGACGTAACCATCCGACTAACTGCGAAGGCGGATTCTAAAGATGAAGCAGAACAAATGTTAGAAAAAACCAAG
GCAGAAATCCTTGCTCGAGCAGGCGATTATTACTATGCTGAAGGTGAACAGGTCGCTTTTCCAGATTTTGTAGTACAAGA
ATTAATCAAACGAAAACTAACGTTAACGGCAGCAGAAAGTTTGACTGGTGGTGCTTTCCAAAATCAATTAGTAAAAACAG
CGGGTACTTCCGCAGTATTTTCGGGAGGCTTTGTAACGTATTCTGATGAAGTAAAAACTAGTTTATTGGGGGTTCGTCCG
GAAACTATCGCTCAATACACGGTGGTAAGTCGTCCGGTTGCTGAAGAGATGGCGCGCGGGGCACGAAAGCAATTAGGTAC
GGACCTAGCGATTAGCTTTACTGGAGTAGCGGGACCTGAAGGATTAGAAGGACACGCGCCTGGTGACGTATGGATTGGGT
TGGCGTTGCCAGATGGAAGTACCGTGGCTAAGGGGTTCCATTTTAGCGGTAACCGGGAAAAAATCCGCCATTTAGCAGTA
ATGAATGGTTTTCGAATGATTTGGGAACAAGTGGTTAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

47.156

100

0.482
  cinA Streptococcus mitis NCTC 12261

46.682

100

0.477
  cinA Streptococcus pneumoniae TIGR4

46.445

100

0.475
  cinA Streptococcus pneumoniae Rx1

45.972

100

0.47
  cinA Streptococcus pneumoniae R6

45.972

100

0.47
  cinA Streptococcus pneumoniae D39

45.735

100

0.467
  cinA Streptococcus mutans UA159

46.043

100

0.465
  cinA Bacillus subtilis subsp. subtilis str. 168

42.118

98.305

0.414
  cinA Streptococcus suis isolate S10

40.146

99.516

0.4

Multiple sequence alignment