Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | D0871_RS12560 | Genome accession | NZ_CP033141 |
| Coordinates | 2508374..2508658 (-) | Length | 94 a.a. |
| NCBI ID | WP_023624118.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 160807 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2503374..2513658
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0871_RS12535 (D0871_12535) | - | 2503867..2505081 (+) | 1215 | WP_005456922.1 | pyridoxal phosphate-dependent aminotransferase | - |
| D0871_RS12540 (D0871_12540) | yfbR | 2505173..2505757 (+) | 585 | WP_005482513.1 | 5'-deoxynucleotidase | - |
| D0871_RS12545 (D0871_12545) | - | 2505770..2507104 (+) | 1335 | WP_044139060.1 | anti-phage deoxyguanosine triphosphatase | - |
| D0871_RS12550 (D0871_12550) | - | 2507114..2507728 (-) | 615 | WP_005456903.1 | DTW domain-containing protein | - |
| D0871_RS12555 (D0871_12555) | rrtA | 2507732..2508283 (+) | 552 | WP_023624117.1 | rhombosortase | - |
| D0871_RS12560 (D0871_12560) | comEA | 2508374..2508658 (-) | 285 | WP_023624118.1 | ComEA family DNA-binding protein | Machinery gene |
| D0871_RS12565 (D0871_12565) | ppiD | 2508809..2510668 (-) | 1860 | WP_023624119.1 | peptidylprolyl isomerase | - |
| D0871_RS12570 (D0871_12570) | - | 2510868..2511140 (-) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10205.90 Da Isoelectric Point: 6.9786
>NTDB_id=282383 D0871_RS12560 WP_023624118.1 2508374..2508658(-) (comEA) [Vibrio parahaemolyticus strain 160807]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEARILL
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEARILL
Nucleotide
Download Length: 285 bp
>NTDB_id=282383 D0871_RS12560 WP_023624118.1 2508374..2508658(-) (comEA) [Vibrio parahaemolyticus strain 160807]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGCCCGCATTCTTCTATAA
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACTGAGCACGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACCATCAAGAAAAACGAAGCCCGCATTCTTCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
98.936 |
100 |
0.989 |
| comEA | Vibrio campbellii strain DS40M4 |
76.842 |
100 |
0.777 |
| comEA | Vibrio cholerae C6706 |
63.83 |
100 |
0.638 |
| comEA | Vibrio cholerae strain A1552 |
63.83 |
100 |
0.638 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
54.839 |
65.957 |
0.362 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
54.839 |
65.957 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
39.535 |
91.489 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
39.535 |
91.489 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
39.535 |
91.489 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
39.535 |
91.489 |
0.362 |