Detailed information NTG0281811

Bioinformatically predicted

Overview

• Name: covR
• Type: Regulator
• Locus tag: LL14B4_RS08365
• Genome accession: NZ_CP028160
• Coordinates: 1706434..1707126 (-)
• Length: 230 a.a.
• NCBI ID: WP_003130756.1
• Uniprot ID: S6EZK2
• Organism: Lactococcus lactis subsp. lactis strain 14B4
• Function: repress the expression of comX (predicted from homology) Competence regulation

Genomic Context

Location: 1701434..1712126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LL14B4_RS08350 (LL14B4_08340)	-	1703053..1703394 (-)	342	WP_010906046.1	P-II family nitrogen regulator	-
LL14B4_RS08355 (LL14B4_08345)	-	1703526..1704767 (-)	1242	WP_033898637.1	ammonium transporter	-
LL14B4_RS08360 (LL14B4_08350)	covS	1704950..1706425 (-)	1476	WP_010906048.1	HAMP domain-containing sensor histidine kinase	Regulator
LL14B4_RS08365 (LL14B4_08355)	covR	1706434..1707126 (-)	693	WP_003130756.1	response regulator transcription factor	Regulator
LL14B4_RS08370 (LL14B4_08360)	-	1707282..1707812 (-)	531	WP_033898640.1	YceD family protein	-
LL14B4_RS08375 (LL14B4_08365)	-	1707943..1708188 (-)	246	WP_003130760.1	type B 50S ribosomal protein L31	-
LL14B4_RS08380 (LL14B4_08370)	-	1708344..1708808 (-)	465	WP_017864799.1	hypothetical protein	-
LL14B4_RS08385 (LL14B4_08375)	-	1708890..1709252 (-)	363	WP_010906050.1	TIGR02328 family protein	-
LL14B4_RS08395 (LL14B4_08385)	-	1709720..1710250 (-)	531	WP_033898642.1	CHAP domain-containing protein	-
LL14B4_RS08400 (LL14B4_08390)	-	1710312..1711148 (-)	837	WP_032946821.1	metallophosphoesterase	-

Sequence

Protein

• Length: 230 a.a.
• Molecular weight: 26684.36 Da
• Isoelectric Point: 5.1273

>NTDB_id=281811 LL14B4_RS08365 WP_003130756.1 1706434..1707126(-) (covR) [Lactococcus lactis subsp. lactis strain 14B4]
MTSKKILIIEDEKNLARFVSLELEHEGYATEIKDNGRSGLEEATSKDYDLILLDLMLPELDGFEVARRLRKEKDTPIIMM
TARDSTMDRVAGLDIGADDYITKPFAIEELLARVRAFFRREEHGHAVERAENTSFRDLVIDKTNRTVHRGKKVIDLTRRE
YDLLLTLMQNVGDVVTREHLVSQVWGYEEGTETNVVDVYIRYLRNKIDVEGQDSYIQTVRGLGYVMRERK

Nucleotide

• Length: 693 bp

>NTDB_id=281811 LL14B4_RS08365 WP_003130756.1 1706434..1707126(-) (covR) [Lactococcus lactis subsp. lactis strain 14B4]
ATGACTTCAAAGAAAATTTTGATTATTGAGGATGAAAAGAATTTAGCGCGATTCGTCTCATTAGAATTAGAACATGAAGG
CTATGCGACTGAGATTAAGGATAATGGTCGTTCTGGTCTTGAAGAAGCAACTTCAAAAGATTATGATTTAATCTTGCTTG
ATTTGATGCTTCCTGAACTTGACGGTTTTGAGGTAGCCCGTCGTTTACGAAAAGAAAAAGATACACCAATCATTATGATG
ACGGCACGTGATTCAACGATGGACCGTGTTGCTGGTCTTGATATTGGGGCTGATGATTATATCACTAAACCTTTTGCGAT
TGAGGAACTTTTGGCGCGTGTTCGTGCTTTCTTCCGTCGTGAAGAGCATGGTCATGCCGTTGAACGTGCTGAAAATACTT
CTTTCCGTGATCTTGTGATTGACAAAACGAATCGCACCGTTCATCGTGGTAAAAAAGTAATTGATTTAACACGTCGTGAG
TATGACCTCCTTTTGACATTGATGCAAAATGTTGGCGATGTTGTGACTCGTGAACATTTAGTTTCACAAGTTTGGGGATA
TGAAGAAGGAACAGAAACAAATGTTGTGGATGTTTATATTCGTTATCTTAGAAATAAAATTGATGTTGAAGGTCAAGATA
GCTATATTCAAACTGTTCGTGGCTTAGGTTATGTAATGCGTGAACGCAAATAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-115)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (153-226)

3D structure

• AlphaFold DB: S6EZK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
covR	Lactococcus lactis subsp. lactis strain DGCC12653	100	100	1
covR	Streptococcus salivarius strain HSISS4	68.421	99.13	0.678
vicR	Streptococcus mutans UA159	45.887	100	0.461
micA	Streptococcus pneumoniae Cp1015	43.478	100	0.435
ciaR	Streptococcus mutans UA159	37.611	98.261	0.37
ciaR	Streptococcus pneumoniae Rx1	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae D39	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae R6	36.726	98.261	0.361
ciaR	Streptococcus pneumoniae TIGR4	36.726	98.261	0.361