NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	UTEX3055_RS11585	Genome accession	NZ_CP033061
Coordinates	2278708..2279388 (-)	Length	226 a.a.
NCBI ID	WP_265575068.1	Uniprot ID	-
Organism	Synechococcus elongatus UTEX 3055
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 2273708..2284388

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UTEX3055_RS11565	-	2274193..2275449 (+)	1257	WP_126147948.1	Y-family DNA polymerase	-
UTEX3055_RS11570	-	2275427..2276263 (+)	837	WP_238154192.1	hypothetical protein	-
UTEX3055_RS11575	ilvC	2276821..2277813 (-)	993	WP_039755692.1	ketol-acid reductoisomerase	-
UTEX3055_RS11580	-	2277812..2278705 (+)	894	WP_011242324.1	PHP domain-containing protein	-
UTEX3055_RS11585	clpP	2278708..2279388 (-)	681	WP_265575068.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
UTEX3055_RS11590	psb29	2279432..2280196 (+)	765	WP_039755956.1	photosystem II biogenesis protein Psp29	-
UTEX3055_RS11595	-	2280318..2280896 (+)	579	WP_238154193.1	hypothetical protein	-
UTEX3055_RS11600	rpoS	2280912..2281844 (-)	933	WP_011378081.1	RpoD/SigA family RNA polymerase sigma factor	Regulator
UTEX3055_RS11605	-	2282049..2282234 (+)	186	WP_039755693.1	hypothetical protein	-
UTEX3055_RS11610	-	2282652..2283719 (+)	1068	WP_126147950.1	hypothetical protein	-

Sequence

Protein

Download Length: 226 a.a. Molecular weight: 24951.36 Da Isoelectric Point: 4.9920

                                >NTDB_id=281727 UTEX3055_RS11585 WP_265575068.1 2278708..2279388(-) (clpP) [Synechococcus elongatus UTEX 3055]

MARFAKQRPKGTSGYNNEVFTDRAATENLMIPIVVEESGRGERAFDIYSRLLRERIIFLGEPVTSDVANRIVAQLLFLEA

EDPEKDIYLYINSPGGSVYDGLGIFDTMNHIRPDVSTVCVGLAASMGAFLLAAGAKGKRTSLAHSRIMIHQPLGGAQGQA

KDIEIQANEILYIKQNLNEVLAERTGQPLSRIEDDTDRDFFMSASEAVEYGLIDRVIDRRALKATA

Nucleotide

Download Length: 681 bp

                                >NTDB_id=281727 UTEX3055_RS11585 WP_265575068.1 2278708..2279388(-) (clpP) [Synechococcus elongatus UTEX 3055]

ATCGCCCGCTTTGCCAAGCAACGACCGAAGGGCACCTCTGGCTACAATAACGAAGTCTTCACCGACCGTGCAGCAACCGA

GAACCTCATGATCCCCATCGTCGTCGAAGAATCTGGACGGGGCGAACGCGCCTTTGATATCTACTCACGTCTGTTGCGGG

AGCGGATTATCTTCTTGGGCGAGCCTGTCACCTCTGATGTCGCCAACCGTATCGTGGCGCAGTTGCTGTTCCTCGAAGCG

GAAGATCCCGAGAAAGATATCTACCTCTACATCAATTCGCCGGGCGGCTCGGTCTATGACGGACTGGGTATCTTCGACAC

AATGAACCACATCCGACCGGATGTCTCGACCGTTTGTGTCGGGCTGGCTGCCAGCATGGGCGCCTTCCTGCTCGCAGCCG

GAGCCAAAGGTAAGCGCACCAGCTTGGCCCACTCGCGGATCATGATTCACCAACCCTTGGGTGGTGCTCAAGGTCAGGCT

AAGGACATCGAAATCCAAGCCAACGAAATCCTCTACATCAAGCAGAACTTGAACGAGGTTTTGGCGGAGCGCACCGGCCA

GCCCCTCAGCCGCATTGAAGATGACACCGATCGCGACTTCTTCATGTCCGCGAGTGAGGCGGTTGAATACGGCCTGATCG

ATCGCGTCATCGATCGCCGCGCCCTCAAAGCCACGGCTTAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(40-219)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	67.021	83.186	0.558
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.921	84.513	0.549
clpP	Lactococcus lactis subsp. cremoris KW2	51.02	86.726	0.442
clpP	Streptococcus thermophilus LMG 18311	50.51	86.726	0.438
clpP	Streptococcus thermophilus LMD-9	50.51	86.726	0.438
clpP	Streptococcus pneumoniae D39	50	86.726	0.434
clpP	Streptococcus pneumoniae Rx1	50	86.726	0.434
clpP	Streptococcus pneumoniae R6	50	86.726	0.434
clpP	Streptococcus pneumoniae TIGR4	50	86.726	0.434
clpP	Streptococcus mutans UA159	49.49	86.726	0.429
clpP	Streptococcus pyogenes JRS4	48.98	86.726	0.425
clpP	Streptococcus pyogenes MGAS315	48.98	86.726	0.425
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	48.98	86.726	0.425

Detailed information NTG0281727