Detailed information NTG0281728

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: UTEX3055_RS11600
• Genome accession: NZ_CP033061
• Coordinates: 2280912..2281844 (-)
• Length: 310 a.a.
• NCBI ID: WP_011378081.1
• Uniprot ID: Q31MY2
• Organism: Synechococcus elongatus UTEX 3055
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2275912..2286844

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UTEX3055_RS11575	ilvC	2276821..2277813 (-)	993	WP_039755692.1	ketol-acid reductoisomerase	-
UTEX3055_RS11580	-	2277812..2278705 (+)	894	WP_011242324.1	PHP domain-containing protein	-
UTEX3055_RS11585	clpP	2278708..2279388 (-)	681	WP_265575068.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
UTEX3055_RS11590	psb29	2279432..2280196 (+)	765	WP_039755956.1	photosystem II biogenesis protein Psp29	-
UTEX3055_RS11595	-	2280318..2280896 (+)	579	WP_238154193.1	hypothetical protein	-
UTEX3055_RS11600	rpoS	2280912..2281844 (-)	933	WP_011378081.1	RpoD/SigA family RNA polymerase sigma factor	Regulator
UTEX3055_RS11605	-	2282049..2282234 (+)	186	WP_039755693.1	hypothetical protein	-
UTEX3055_RS11610	-	2282652..2283719 (+)	1068	WP_126147950.1	hypothetical protein	-
UTEX3055_RS11615	-	2283732..2284406 (+)	675	WP_126147951.1	acyltransferase	-
UTEX3055_RS14720	-	2284582..2284740 (+)	159	WP_011242331.1	hypothetical protein	-
UTEX3055_RS11620	-	2284722..2285024 (+)	303	WP_126147952.1	hypothetical protein	-
UTEX3055_RS14640	-	2285422..2285583 (-)	162	WP_155813833.1	hypothetical protein	-
UTEX3055_RS11625	-	2285629..2286135 (-)	507	WP_238154194.1	hypothetical protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35282.51 Da
• Isoelectric Point: 9.6197

>NTDB_id=281728 UTEX3055_RS11600 WP_011378081.1 2280912..2281844(-) (rpoS) [Synechococcus elongatus UTEX 3055]
MASASAHAVATAQRRTRDNVSWYLSSIGRIPLLTADQEIELGQKVQVMMNLLEETSSDRTFTEAETAAIQLGQRAKERMI
KANLRLVVSVAKKYQGKGLEFLDLIQEGALGLERAVEKFDPSKGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLTERL
SQIRKVTRELAHELGRLPSRQEIAEAVQLPLNDLETILRQSRQCTSLDAPVSGEDGKSFLGELIADPNGNEPMDIMENAM
QREQLDAWLEHLTPQERQVLYLRFGLGDGERHTLAEIGRMMEVSRERVRQVEVKALRKLRNLTKRSRIAV

Nucleotide

• Length: 933 bp

>NTDB_id=281728 UTEX3055_RS11600 WP_011378081.1 2280912..2281844(-) (rpoS) [Synechococcus elongatus UTEX 3055]
ATGGCGAGTGCTTCGGCTCATGCTGTCGCGACGGCTCAGCGACGAACAAGAGATAACGTCAGTTGGTATCTCAGCTCCAT
CGGTCGGATTCCATTGCTCACCGCCGATCAGGAGATCGAGCTGGGGCAGAAAGTGCAGGTGATGATGAACCTGCTGGAAG
AAACTTCTAGCGATCGCACGTTTACTGAGGCCGAAACCGCAGCGATCCAGCTGGGGCAGCGTGCTAAGGAACGGATGATC
AAGGCCAACTTGCGTCTTGTGGTCTCTGTGGCCAAAAAGTACCAAGGTAAGGGTCTTGAGTTTCTTGACCTGATCCAAGA
AGGCGCTCTCGGGCTAGAACGTGCTGTCGAGAAATTTGACCCCTCCAAGGGCTACAAGTTTTCCACCTATGCCTTTTGGT
GGATTCGCCAGAGCATGACAAGGGCGATCGCCTGCCAATCGCGCACTATTCGCCTGCCGGTTCACTTGACTGAACGGCTG
AGCCAAATCCGCAAAGTGACTCGGGAACTGGCGCACGAGCTAGGCCGTTTGCCCTCTCGCCAAGAAATTGCAGAAGCGGT
TCAGTTGCCACTGAATGACCTCGAAACAATTCTGCGTCAGTCGCGCCAATGCACCAGCCTAGATGCTCCAGTCAGTGGTG
AAGATGGCAAGAGTTTCCTGGGTGAGCTGATTGCTGATCCCAACGGCAATGAGCCCATGGACATCATGGAAAATGCCATG
CAGCGCGAGCAGCTTGATGCTTGGCTCGAGCATCTCACGCCCCAAGAGCGCCAGGTGCTCTATCTCCGCTTTGGACTGGG
TGATGGCGAACGTCATACCCTCGCTGAAATCGGCCGGATGATGGAAGTCTCGCGCGAGCGGGTCCGCCAAGTTGAGGTCA
AAGCGCTGCGTAAGCTCCGCAACCTGACGAAGCGATCGCGGATTGCTGTCTAG

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (248-301)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (18-48)

• Sigma-70 region 3 (Sigma70_r3) (158-234)

• Sigma-70 region 2 (Sigma70_r2) (79-148)

3D structure

• AlphaFold DB: Q31MY2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	39.535	97.097	0.384