Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C7M53_RS09695 Genome accession   NZ_CP027789
Coordinates   1868013..1869263 (+) Length   416 a.a.
NCBI ID   WP_119953766.1    Uniprot ID   -
Organism   Bacillus licheniformis strain TAB7     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1863013..1874263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M53_RS09670 (C7M53_09655) ymfI 1864327..1865058 (+) 732 WP_003181914.1 elongation factor P 5-aminopentanone reductase -
  C7M53_RS09675 (C7M53_09660) - 1865129..1865386 (+) 258 WP_003181915.1 DUF3243 domain-containing protein -
  C7M53_RS09680 (C7M53_09665) - 1865634..1866425 (+) 792 WP_003181917.1 YmfK family protein -
  C7M53_RS09685 (C7M53_09670) - 1866443..1867345 (+) 903 WP_003181919.1 helix-turn-helix domain-containing protein -
  C7M53_RS09690 (C7M53_09675) pgsA 1867412..1867993 (+) 582 WP_003181921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C7M53_RS09695 (C7M53_09680) cinA 1868013..1869263 (+) 1251 WP_119953766.1 competence/damage-inducible protein A Machinery gene
  C7M53_RS09700 (C7M53_09685) recA 1869431..1870477 (+) 1047 WP_003181926.1 recombinase RecA Machinery gene
  C7M53_RS09705 (C7M53_09690) rny 1870818..1872377 (+) 1560 WP_003181928.1 ribonuclease Y -
  C7M53_RS09710 (C7M53_09695) - 1872464..1873261 (+) 798 WP_003181930.1 TIGR00282 family metallophosphoesterase -
  C7M53_RS09715 (C7M53_09700) spoVS 1873463..1873723 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45742.08 Da        Isoelectric Point: 4.9958

>NTDB_id=280737 C7M53_RS09695 WP_119953766.1 1868013..1869263(+) (cinA) [Bacillus licheniformis strain TAB7]
MKLERKAEIIAVGSELLLGQIVNTNAQFISRHLAEIGINVFYHTAVGDNPERLKQVIQTAQQRSDFIIFSGGLGPTKDDL
TKETIAEVVGRPLKLDDEAFESIQDYFKKTNREMSPNNRKQALILEGSDVLPNRFGMAPGMLLEHESRFYMLLPGPPKEL
EPMFENEAKPLILEKLGSREKIVLRVLRFFGIGESQLETDLEDLIDAQTNPTIAPLAADGEVTLRLTAKHADPEETNRLL
KETEDRILERVGEFFYGYDDTSLAEELAKACRSKGMTLAAAESFTGGLFSSWLTEMSGASEYFKGGAVCYTNELKVSAAG
VSEDTLQRYGAVSAQCAKELAAGIRVKTGSDIGISFTGVAGPNTQEGHPAGKVFIGISVKDQAEEAFEFQFAGSRSAVRK
RSAKYGCHLLLKMMEK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=280737 C7M53_RS09695 WP_119953766.1 1868013..1869263(+) (cinA) [Bacillus licheniformis strain TAB7]
ATGAAGTTGGAAAGAAAAGCGGAAATTATCGCTGTCGGCTCTGAGCTTCTGCTCGGACAAATCGTTAATACAAATGCTCA
GTTTATCAGCAGGCATTTGGCCGAAATCGGCATTAACGTCTTTTATCACACGGCGGTGGGAGACAATCCGGAGCGCCTTA
AACAAGTCATTCAGACAGCGCAGCAAAGGTCTGACTTCATCATTTTTTCGGGAGGCCTCGGACCGACGAAAGACGATCTG
ACAAAAGAAACGATCGCCGAAGTTGTCGGGCGCCCTCTTAAGCTCGACGATGAAGCCTTCGAATCGATTCAGGATTACTT
CAAAAAAACGAACCGGGAGATGTCGCCGAACAACCGCAAACAGGCGCTGATCCTCGAAGGATCCGATGTTCTGCCGAACC
GCTTTGGGATGGCTCCGGGAATGCTGCTTGAGCATGAATCGCGCTTTTATATGCTTCTGCCGGGACCTCCGAAAGAGCTG
GAGCCGATGTTTGAAAACGAAGCGAAGCCGCTGATTTTGGAAAAGCTCGGCTCGAGGGAAAAGATCGTGTTAAGGGTGCT
GCGCTTCTTCGGCATCGGTGAATCCCAGCTTGAAACCGATTTGGAAGATCTCATCGATGCGCAGACTAATCCGACAATCG
CTCCGCTTGCGGCAGACGGGGAAGTCACGCTCAGGCTTACGGCAAAGCATGCGGATCCGGAGGAGACAAACCGCTTGTTA
AAAGAAACGGAAGACCGCATTTTGGAGCGGGTCGGAGAATTCTTTTACGGGTATGATGATACATCCCTCGCAGAAGAGCT
TGCGAAAGCATGCCGGAGCAAGGGTATGACTCTGGCTGCTGCGGAAAGCTTTACAGGCGGGCTTTTTTCCAGCTGGCTGA
CGGAAATGAGCGGCGCTTCCGAATATTTCAAAGGCGGCGCCGTCTGCTACACAAACGAATTGAAAGTGTCAGCGGCCGGC
GTTTCGGAAGACACGCTGCAGCGCTATGGTGCGGTCAGCGCGCAATGCGCTAAAGAGCTCGCCGCAGGCATCAGAGTCAA
GACAGGAAGCGATATCGGCATCAGCTTCACTGGAGTAGCCGGGCCGAATACGCAAGAAGGCCATCCGGCTGGAAAGGTGT
TTATCGGCATCTCCGTGAAGGACCAGGCTGAGGAAGCGTTCGAATTTCAGTTCGCCGGATCCAGGTCTGCGGTGCGGAAG
CGTTCTGCCAAATACGGCTGCCATCTGTTGCTGAAAATGATGGAAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(261-414)

Damage-inducible protein CinA KH domain (CinA_KH)

(185-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

76.202

100

0.762
  cinA Streptococcus pneumoniae TIGR4

47.494

100

0.478
  cinA Streptococcus mitis SK321

47.017

100

0.474
  cinA Streptococcus pneumoniae R6

47.017

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.474
  cinA Streptococcus mitis NCTC 12261

47.017

100

0.474
  cinA Streptococcus pneumoniae D39

46.778

100

0.471
  cinA Streptococcus mutans UA159

46.585

98.558

0.459
  cinA Streptococcus suis isolate S10

41.162

95.192

0.392

Multiple sequence alignment