Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C7H83_RS02020 Genome accession   NZ_CP027768
Coordinates   379728..380969 (+) Length   413 a.a.
NCBI ID   WP_061840016.1    Uniprot ID   A0A3G5FG81
Organism   Tetragenococcus halophilus strain LMG 26042     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 374728..385969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7H83_RS01995 (C7H83_01985) mscL 374744..375208 (-) 465 WP_227869144.1 large conductance mechanosensitive channel protein MscL -
  C7H83_RS02000 (C7H83_01990) yfmF 375414..376682 (+) 1269 WP_103891913.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  C7H83_RS02005 (C7H83_01995) yfmH 376675..377973 (+) 1299 WP_014123430.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  C7H83_RS02010 (C7H83_02000) - 378070..378951 (+) 882 WP_014123431.1 RodZ family helix-turn-helix domain-containing protein -
  C7H83_RS02015 (C7H83_02005) pgsA 379007..379588 (+) 582 WP_014123432.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C7H83_RS02020 (C7H83_02010) cinA 379728..380969 (+) 1242 WP_061840016.1 competence/damage-inducible protein A Machinery gene
  C7H83_RS02025 (C7H83_02015) recA 381083..382126 (+) 1044 WP_014123434.1 recombinase RecA Machinery gene
  C7H83_RS02030 (C7H83_02020) rny 382385..383941 (+) 1557 WP_103891914.1 ribonuclease Y -
  C7H83_RS02035 (C7H83_02025) treR 383995..384711 (-) 717 WP_103096837.1 trehalose operon repressor -
  C7H83_RS02040 (C7H83_02030) pgmB 384771..385421 (-) 651 WP_103891915.1 beta-phosphoglucomutase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45570.70 Da        Isoelectric Point: 4.7511

>NTDB_id=280361 C7H83_RS02020 WP_061840016.1 379728..380969(+) (cinA) [Tetragenococcus halophilus strain LMG 26042]
MKAEIIAVGTEILLGQIDNTNTTFLAEELAGLGIEVYYQSVVGDNPKRLEEALELADQRSDLTVLCGGLGPTDDDLTKQV
TAKHVGQELVTDEGGYQNLLAFFEKRERPMTENNRLQALVFKDGESLQNSNGLAVGIFYQTPTGKSYLLLPGPPNELKPM
FFNEAIPLLQNHFQTDEQLISRVLRFYGIGESELVTKLADLIKHQSNPTIASYAKPNEVTLRLTVSTTDKNDGKQKLNQM
EEVILDRVGDYFYGYGENNSLVEVVVELLKKQKKTVSAAESLTAGSFQAMLGSVSGVSEVFPGGFVTYSETTKEQLLNLD
SKMLEKYGTVSKECAEAMAIQAKKLAHSDFALSFTGVAGPDSLEDQKAGTVWIGLATEEGVESYLYHFTRNRNYIRHSAV
MTGLDLLRKKLIK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=280361 C7H83_RS02020 WP_061840016.1 379728..380969(+) (cinA) [Tetragenococcus halophilus strain LMG 26042]
ATGAAAGCAGAAATCATAGCAGTAGGTACAGAAATTTTGTTAGGACAAATTGATAATACGAATACAACTTTTTTAGCGGA
AGAATTAGCTGGATTAGGAATTGAAGTTTATTATCAAAGTGTTGTAGGAGACAATCCTAAACGCCTGGAAGAAGCATTGG
AGCTAGCGGACCAAAGAAGTGATTTAACCGTTTTGTGTGGGGGATTAGGTCCTACAGACGATGACCTAACAAAACAAGTT
ACAGCAAAACATGTAGGACAAGAGTTAGTGACAGATGAAGGGGGTTATCAAAACTTATTAGCATTTTTTGAAAAACGTGA
ACGACCAATGACAGAAAATAATCGTCTACAGGCTTTAGTTTTCAAAGATGGAGAATCTTTACAAAATAGTAATGGTTTGG
CTGTAGGGATTTTTTATCAAACACCGACAGGTAAATCTTATTTGTTATTACCAGGGCCACCTAATGAATTAAAACCGATG
TTTTTTAATGAAGCTATTCCTTTATTGCAAAATCATTTTCAAACAGATGAACAGTTAATTTCGCGCGTGTTGCGTTTTTA
TGGCATTGGAGAATCAGAACTTGTTACTAAATTAGCAGACCTAATCAAACATCAAAGCAATCCAACGATTGCATCATATG
CTAAACCTAATGAAGTTACCTTGCGTTTGACTGTTAGTACCACAGATAAAAATGATGGAAAACAAAAACTGAATCAAATG
GAAGAAGTAATATTAGATCGAGTTGGTGATTACTTTTATGGTTATGGAGAAAATAATTCTTTAGTAGAAGTTGTTGTCGA
ACTATTAAAGAAACAGAAAAAAACTGTAAGTGCAGCTGAAAGTTTGACTGCAGGTAGTTTTCAAGCAATGTTAGGCAGTG
TTTCTGGCGTTTCCGAAGTTTTTCCTGGTGGTTTTGTTACATACTCAGAAACCACCAAGGAACAGTTACTAAATCTTGAT
TCGAAAATGTTAGAAAAATATGGAACGGTTAGTAAAGAATGTGCAGAAGCGATGGCAATACAAGCGAAAAAACTAGCCCA
TAGTGACTTTGCACTTTCTTTTACAGGAGTAGCCGGACCGGATTCACTAGAAGATCAAAAAGCAGGGACAGTTTGGATAG
GTTTAGCAACTGAAGAAGGTGTGGAAAGTTATTTATACCACTTTACTCGTAATCGGAACTATATTCGTCATAGCGCAGTC
ATGACTGGCTTAGATTTATTAAGGAAAAAATTAATAAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G5FG81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.781

100

0.528
  cinA Streptococcus mitis NCTC 12261

51.781

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.544

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.306

100

0.523
  cinA Streptococcus pneumoniae R6

51.306

100

0.523
  cinA Streptococcus pneumoniae D39

51.069

100

0.521
  cinA Streptococcus mutans UA159

50.481

100

0.508
  cinA Bacillus subtilis subsp. subtilis str. 168

45.366

99.274

0.45
  cinA Streptococcus suis isolate S10

43.855

100

0.441

Multiple sequence alignment