Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4K02_RS04275 Genome accession   NZ_CP027755
Coordinates   947566..948774 (-) Length   402 a.a.
NCBI ID   WP_043049314.1    Uniprot ID   A0A0D0RQD7
Organism   Pseudomonas synxantha strain 2-79     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 942566..953774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K02_RS04240 (C4K02_0857) - 943761..943934 (-) 174 WP_043049308.1 DUF3094 family protein -
  C4K02_RS04245 (C4K02_0858) - 944022..944651 (-) 630 WP_043049309.1 DUF1780 domain-containing protein -
  C4K02_RS04250 (C4K02_0859) - 944920..945609 (+) 690 WP_043049310.1 energy-coupling factor ABC transporter permease -
  C4K02_RS04255 (C4K02_0860) - 945674..945889 (+) 216 WP_003171680.1 hypothetical protein -
  C4K02_RS04260 (C4K02_0861) yacG 945886..946086 (-) 201 WP_043049311.1 DNA gyrase inhibitor YacG -
  C4K02_RS04265 (C4K02_0862) coaE 946083..946706 (-) 624 WP_043049312.1 dephospho-CoA kinase -
  C4K02_RS04270 (C4K02_0863) pilD 946703..947569 (-) 867 WP_043049313.1 A24 family peptidase Machinery gene
  C4K02_RS04275 (C4K02_0864) pilC 947566..948774 (-) 1209 WP_043049314.1 type II secretion system F family protein Machinery gene
  C4K02_RS04280 (C4K02_0865) - 948976..949389 (+) 414 WP_043049315.1 pilin -
  C4K02_RS04290 (C4K02_0867) - 949676..949981 (+) 306 WP_043049316.1 DUF6388 family protein -
  C4K02_RS04295 (C4K02_0869) nadC 950101..950949 (-) 849 WP_043049317.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C4K02_RS04300 (C4K02_0870) - 951195..953342 (+) 2148 WP_043049318.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43508.93 Da        Isoelectric Point: 10.0127

>NTDB_id=280141 C4K02_RS04275 WP_043049314.1 947566..948774(-) (pilC) [Pseudomonas synxantha strain 2-79]
MNDTSTIYAWEGINRKGRRVCGQIAGHDLALIKAQLRQQGICPERVRKKPASRPIFAPRILPADIALLTRQLATLLKASI
PLLQAFDIISEGVENRQVRDLVNTLKQQIASGNSLADALRQHPRYFDDLYCNLVAAGEQAGALETLLERVAIHLEKSQRL
KARIKKAMTYPVAVLVVATLVSAVLLIHVVPQFQNLFAGVDSQLPGFTLAVIALSEFLQQAWWVLALGLGASLAGLRQAY
RAYPGFRHRLQAGLLKIPLAGKLLHNSAVARYARTLSTTFAAGVPLVQALGSVAGAVGNGPFKQAIERMRHDVSTGMQLN
HSMAGSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYEADVDTLVDNLTSLMEPLIMVVLGGIVGALVIAMYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=280141 C4K02_RS04275 WP_043049314.1 947566..948774(-) (pilC) [Pseudomonas synxantha strain 2-79]
ATGAATGACACGTCAACGATCTACGCCTGGGAAGGCATCAACCGCAAAGGACGCAGGGTGTGCGGGCAAATTGCTGGTCA
TGACCTTGCGCTGATCAAGGCACAATTGCGCCAGCAAGGGATCTGCCCCGAGCGTGTGCGCAAGAAGCCCGCATCACGGC
CGATCTTCGCCCCACGCATATTGCCTGCGGATATCGCCCTGCTCACCCGCCAGTTGGCCACGTTGCTCAAGGCCAGCATC
CCGTTGCTACAAGCCTTCGACATCATCAGCGAGGGCGTCGAGAACCGGCAGGTGCGTGATCTTGTCAATACTTTGAAACA
GCAGATCGCCAGCGGCAACAGCTTGGCCGATGCGCTGCGCCAACATCCACGTTATTTCGACGATCTGTACTGCAACCTGG
TCGCCGCCGGGGAACAGGCAGGTGCCCTGGAAACCCTACTGGAGCGCGTGGCGATTCACCTGGAAAAAAGCCAACGGCTC
AAAGCCAGGATCAAAAAGGCCATGACCTACCCTGTCGCGGTACTGGTGGTTGCCACACTGGTCAGCGCGGTGCTGTTGAT
ACACGTAGTGCCACAATTCCAGAACCTGTTCGCCGGCGTCGACAGCCAATTGCCCGGGTTTACCTTGGCGGTCATTGCCC
TGTCCGAATTCCTGCAACAGGCGTGGTGGGTGCTGGCGCTGGGCTTGGGTGCGTCGCTGGCAGGGCTGCGCCAGGCTTAC
CGAGCTTACCCAGGCTTTCGCCATCGGCTGCAAGCGGGTTTGTTGAAAATCCCCCTGGCAGGCAAACTGCTGCACAACTC
TGCGGTCGCTCGTTACGCCCGCACGCTTTCAACCACCTTTGCAGCGGGCGTGCCCCTCGTGCAGGCATTGGGCTCGGTGG
CCGGCGCCGTCGGCAATGGACCATTCAAACAGGCAATTGAACGTATGCGCCACGATGTATCCACAGGCATGCAATTGAAC
CACTCCATGGCCGGCAGCGGCCTGTTTCCAGGCATGGCGATCCAGATGACGGCCATCGGTGAAGAATCCGGGACGCTGGA
CCGGATGTTGGAAAAAGTCGCGAACCACTACGAGGCGGACGTGGACACCTTGGTCGATAACCTCACCAGCCTGATGGAAC
CGCTGATCATGGTGGTACTGGGGGGCATTGTCGGGGCACTGGTGATCGCCATGTACCTGCCGGTCTTTCAACTGGGTACG
GCATTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D0RQD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

98.507

0.565
  pilC Acinetobacter baylyi ADP1

50.505

98.507

0.498
  pilC Legionella pneumophila strain ERS1305867

48.615

98.756

0.48
  pilC Acinetobacter baumannii D1279779

48.861

98.259

0.48
  pilG Neisseria gonorrhoeae MS11

40.052

95.025

0.381
  pilC Thermus thermophilus HB27

37.717

100

0.378
  pilG Neisseria meningitidis 44/76-A

39.267

95.025

0.373
  pilC Vibrio cholerae strain A1552

37.817

98.01

0.371

Multiple sequence alignment