Detailed information NTG0280140

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K02_RS04270
• Genome accession: NZ_CP027755
• Coordinates: 946703..947569 (-)
• Length: 288 a.a.
• NCBI ID: WP_043049313.1
• Uniprot ID: A0A0D0TDY9
• Organism: Pseudomonas synxantha strain 2-79
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 941703..952569

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K02_RS04235 (C4K02_0856)	-	942402..943700 (-)	1299	WP_043049307.1	NAD(P)/FAD-dependent oxidoreductase	-
C4K02_RS04240 (C4K02_0857)	-	943761..943934 (-)	174	WP_043049308.1	DUF3094 family protein	-
C4K02_RS04245 (C4K02_0858)	-	944022..944651 (-)	630	WP_043049309.1	DUF1780 domain-containing protein	-
C4K02_RS04250 (C4K02_0859)	-	944920..945609 (+)	690	WP_043049310.1	energy-coupling factor ABC transporter permease	-
C4K02_RS04255 (C4K02_0860)	-	945674..945889 (+)	216	WP_003171680.1	hypothetical protein	-
C4K02_RS04260 (C4K02_0861)	yacG	945886..946086 (-)	201	WP_043049311.1	DNA gyrase inhibitor YacG	-
C4K02_RS04265 (C4K02_0862)	coaE	946083..946706 (-)	624	WP_043049312.1	dephospho-CoA kinase	-
C4K02_RS04270 (C4K02_0863)	pilD	946703..947569 (-)	867	WP_043049313.1	A24 family peptidase	Machinery gene
C4K02_RS04275 (C4K02_0864)	pilC	947566..948774 (-)	1209	WP_043049314.1	type II secretion system F family protein	Machinery gene
C4K02_RS04280 (C4K02_0865)	-	948976..949389 (+)	414	WP_043049315.1	pilin	-
C4K02_RS04290 (C4K02_0867)	-	949676..949981 (+)	306	WP_043049316.1	DUF6388 family protein	-
C4K02_RS04295 (C4K02_0869)	nadC	950101..950949 (-)	849	WP_043049317.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31820.17 Da
• Isoelectric Point: 7.8972

>NTDB_id=280140 C4K02_RS04270 WP_043049313.1 946703..947569(-) (pilD) [Pseudomonas synxantha strain 2-79]
MILLLTEQSWFFVAMALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILGLPAASAGPAYNLMRPNSCCTRCEQPIRPW
ENIPLLSYLLLRGRCAHCREPISLRYPLTELTCALISATVAWYFGFGWQAGAVLLLSWGLLGLSLIDLDHQLLPDALVLP
LLWLGLILNSADLLATLPDALWGAVIGYMSLWSVFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGLI
AGLILLRLRKAPVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=280140 C4K02_RS04270 WP_043049313.1 946703..947569(-) (pilD) [Pseudomonas synxantha strain 2-79]
TTGATCCTGCTGCTGACTGAACAATCCTGGTTTTTCGTCGCCATGGCACTGGTGCTGGGCCTGATCGTCGGCAGTTTCCT
CAATGTGCTGGTGTGGCGGCTGCCAAAAATGCTCGAGCGCGAATGGCGTGCCCAGGCCCATGAGATCCTCGGTTTGCCTG
CCGCATCCGCCGGGCCGGCCTATAACCTGATGCGCCCGAATTCCTGCTGCACCCGTTGCGAACAGCCGATTCGGCCCTGG
GAAAATATTCCACTGCTCAGCTACCTGTTGCTCAGGGGGCGTTGTGCCCATTGCCGTGAGCCTATCAGCCTTCGTTATCC
CTTAACCGAGCTGACCTGTGCGTTGATCTCGGCCACTGTTGCCTGGTACTTCGGTTTTGGCTGGCAGGCCGGCGCGGTGC
TGTTGTTGAGCTGGGGCTTACTGGGCCTGAGCCTGATTGATCTCGACCATCAATTGTTACCGGATGCGCTGGTGCTGCCG
CTGCTATGGCTGGGACTCATCCTCAACAGCGCCGACCTGCTGGCGACCTTGCCCGATGCGCTGTGGGGTGCGGTCATTGG
CTACATGAGCCTGTGGAGCGTGTTCTGGCTGTTCAAGCTGGTCACCGGTAAAGATGGCATGGGCCATGGCGACTTCAAGT
TATTGGCATTACTGGGGGCCTGGGGTGGGTGGCAGATACTGCCAATGACATTGCTGATGGCCTCACTGTTGGGCTTGATT
GCCGGGCTGATTCTATTGCGTTTGCGCAAGGCCCCGGTGTCAGCACCGATGCCATTTGGTCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (135-243)

3D structure

• AlphaFold DB: A0A0D0TDY9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.688	96.875	0.51
pilD	Vibrio campbellii strain DS40M4	50.357	97.222	0.49
pilD	Neisseria gonorrhoeae MS11	49.624	92.361	0.458
pilD	Acinetobacter baumannii D1279779	48.529	94.444	0.458
pilD	Acinetobacter nosocomialis M2	48.529	94.444	0.458