Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | C4K04_RS27350 | Genome accession | NZ_CP027753 |
| Coordinates | 5969801..5971018 (+) | Length | 405 a.a. |
| NCBI ID | WP_124322353.1 | Uniprot ID | A0A3G7TXQ4 |
| Organism | Pseudomonas chlororaphis strain B25 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5964801..5976018
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4K04_RS27335 (C4K04_5557) | - | 5965244..5968174 (+) | 2931 | WP_124322351.1 | DUF748 domain-containing protein | - |
| C4K04_RS27340 (C4K04_5558) | - | 5968377..5968733 (-) | 357 | WP_009045666.1 | BON domain-containing protein | - |
| C4K04_RS27345 (C4K04_5559) | - | 5969020..5969436 (-) | 417 | WP_124322352.1 | pilin | - |
| C4K04_RS27350 (C4K04_5560) | pilC | 5969801..5971018 (+) | 1218 | WP_124322353.1 | type II secretion system F family protein | Machinery gene |
| C4K04_RS27355 (C4K04_5561) | pilD | 5971021..5971893 (+) | 873 | WP_124322354.1 | A24 family peptidase | Machinery gene |
| C4K04_RS27360 (C4K04_5562) | coaE | 5971890..5972513 (+) | 624 | WP_009045669.1 | dephospho-CoA kinase | - |
| C4K04_RS27365 (C4K04_5563) | yacG | 5972510..5972713 (+) | 204 | WP_009045670.1 | DNA gyrase inhibitor YacG | - |
| C4K04_RS27370 (C4K04_5564) | - | 5972718..5972933 (-) | 216 | WP_092420809.1 | hypothetical protein | - |
| C4K04_RS27375 (C4K04_5565) | - | 5972999..5973688 (-) | 690 | WP_124322355.1 | energy-coupling factor ABC transporter permease | - |
| C4K04_RS27380 (C4K04_5566) | - | 5973685..5974152 (-) | 468 | WP_124322356.1 | FAD/FMN-containing dehydrogenase | - |
Sequence
Protein
Download Length: 405 a.a. Molecular weight: 44454.31 Da Isoelectric Point: 10.4090
>NTDB_id=280102 C4K04_RS27350 WP_124322353.1 5969801..5971018(+) (pilC) [Pseudomonas chlororaphis strain B25]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLIRAQLRKQGISPARIRKKSSSLLQRTPLIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLLAELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLVGALLLSVFGLR
HAHRRSPRFRHWLDAGLLKLPLVAPLLYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLIRAQLRKQGISPARIRKKSSSLLQRTPLIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLLAELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLVGALLLSVFGLR
HAHRRSPRFRHWLDAGLLKLPLVAPLLYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI
Nucleotide
Download Length: 1218 bp
>NTDB_id=280102 C4K04_RS27350 WP_124322353.1 5969801..5971018(+) (pilC) [Pseudomonas chlororaphis strain B25]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGATCAGGGCCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGATCAGGAAGAAATCCA
GCTCGCTGTTGCAGCGCACGCCCCTGATCAAGGCCCGCGACATCAGCCTGTTCACCCGGCAGTTGGCGACCCTGATCAAG
GCCGGTGTACCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGATAACCCGAACATGCGCAAACTGCTGGCCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGTTTCACCAGTGCGCTGCGCAAGAGGCCGCGGTATTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAGCAGGCCGGCGCCCTGGAAACCCTGCTGGAGCGGGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACGCGGATCCGCAAGGCCATGACCTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTGACAGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTCGGCGCGCAACTGCCGGTGTTCACGCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGTGGGCGCGCTGTTGCTCAGCGTGTTCGGCCTGCGC
CATGCCCACCGGCGCTCACCGCGCTTTCGCCACTGGCTGGACGCGGGCCTGCTGAAACTGCCGTTGGTGGCGCCGCTGCT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACTTTCGCCGCCGGAGTGCCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAATCAGGTGTTCAAGCATGCGGTGAACCGCATCAGGCAGGACGTGGCGACCGGCATG
CAGTTGCATTTTTCCATGCGCGCATCCGGCATCTTTCCCGGCATGGCCATCCAGATGACCGCCATCGGCGAAGAGTCCGG
GGCCCTGGACGGCATGCTGGAAAAAGTCGCGATCCACTACGAGGAAGAGGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGATCAGGGCCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGATCAGGAAGAAATCCA
GCTCGCTGTTGCAGCGCACGCCCCTGATCAAGGCCCGCGACATCAGCCTGTTCACCCGGCAGTTGGCGACCCTGATCAAG
GCCGGTGTACCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGATAACCCGAACATGCGCAAACTGCTGGCCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGTTTCACCAGTGCGCTGCGCAAGAGGCCGCGGTATTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAGCAGGCCGGCGCCCTGGAAACCCTGCTGGAGCGGGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACGCGGATCCGCAAGGCCATGACCTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTGACAGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTCGGCGCGCAACTGCCGGTGTTCACGCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGTGGGCGCGCTGTTGCTCAGCGTGTTCGGCCTGCGC
CATGCCCACCGGCGCTCACCGCGCTTTCGCCACTGGCTGGACGCGGGCCTGCTGAAACTGCCGTTGGTGGCGCCGCTGCT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACTTTCGCCGCCGGAGTGCCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAATCAGGTGTTCAAGCATGCGGTGAACCGCATCAGGCAGGACGTGGCGACCGGCATG
CAGTTGCATTTTTCCATGCGCGCATCCGGCATCTTTCCCGGCATGGCCATCCAGATGACCGCCATCGGCGAAGAGTCCGG
GGCCCTGGACGGCATGCTGGAAAAAGTCGCGATCCACTACGAGGAAGAGGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
65.432 |
100 |
0.654 |
| pilC | Acinetobacter baumannii D1279779 |
55.854 |
100 |
0.565 |
| pilC | Acinetobacter baylyi ADP1 |
55.882 |
100 |
0.563 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.273 |
97.778 |
0.511 |
| pilG | Neisseria gonorrhoeae MS11 |
43.176 |
99.506 |
0.43 |
| pilG | Neisseria meningitidis 44/76-A |
41.791 |
99.259 |
0.415 |
| pilC | Vibrio cholerae strain A1552 |
42.857 |
96.79 |
0.415 |
| pilC | Vibrio campbellii strain DS40M4 |
39.552 |
99.259 |
0.393 |