Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4K10_RS26325 Genome accession   NZ_CP027747
Coordinates   5818461..5819678 (+) Length   405 a.a.
NCBI ID   WP_124340763.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aureofaciens strain 66     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5813461..5824678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K10_RS26310 (C4K10_5329) - 5813915..5816833 (+) 2919 WP_009050905.1 DUF748 domain-containing protein -
  C4K10_RS26315 (C4K10_5330) - 5817036..5817392 (-) 357 WP_009050906.1 BON domain-containing protein -
  C4K10_RS26320 (C4K10_5331) - 5817680..5818096 (-) 417 WP_009050907.1 pilin -
  C4K10_RS26325 (C4K10_5332) pilC 5818461..5819678 (+) 1218 WP_124340763.1 type II secretion system F family protein Machinery gene
  C4K10_RS26330 (C4K10_5333) pilD 5819681..5820553 (+) 873 WP_101283594.1 A24 family peptidase Machinery gene
  C4K10_RS26335 (C4K10_5334) coaE 5820550..5821173 (+) 624 WP_009045669.1 dephospho-CoA kinase -
  C4K10_RS26340 (C4K10_5335) yacG 5821170..5821373 (+) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  C4K10_RS26345 (C4K10_5336) - 5821378..5821593 (-) 216 WP_009050911.1 hypothetical protein -
  C4K10_RS26350 (C4K10_5337) - 5821659..5822348 (-) 690 WP_110177023.1 energy-coupling factor ABC transporter permease -
  C4K10_RS26355 (C4K10_5338) - 5822345..5822812 (-) 468 WP_009050913.1 hypothetical protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44429.26 Da        Isoelectric Point: 10.5201

>NTDB_id=279974 C4K10_RS26325 WP_124340763.1 5818461..5819678(+) (pilC) [Pseudomonas chlororaphis subsp. aureofaciens strain 66]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLIRAQLRKQGISPARVRKKSSSLFQRTPPIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLLGELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSKFVQHWWWLLAGALLLSVFGLR
HAHRRSPRFRHWLDAALLKLPLVAPLLYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=279974 C4K10_RS26325 WP_124340763.1 5818461..5819678(+) (pilC) [Pseudomonas chlororaphis subsp. aureofaciens strain 66]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGATCAGGGCCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGGTCAGGAAGAAATCCA
GCTCGCTGTTCCAGCGCACGCCCCCGATCAAGGCTCGCGACATCAGCCTGTTCACCCGGCAGTTGGCGACCCTGATCAAG
GCCGGCGTACCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGATAACCCGAACATGCGCAAACTGCTGGGCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGCTTCACCAGCGCACTACGCAAGAGGCCGCGGTATTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAGCAGGCCGGCGCCCTGGAAACCCTGCTGGAGCGGGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACCCGAATCCGCAAGGCCATGACCTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTCACGGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTCGGCGCGCAACTGCCGGTGTTCACCCAACTGG
TCATCGCCCTCTCGAAATTCGTGCAGCACTGGTGGTGGCTGCTGGCGGGCGCTCTGTTGCTCAGCGTGTTCGGCCTGCGT
CATGCCCACCGGCGCTCACCGCGCTTTCGCCACTGGCTGGACGCGGCCCTGCTGAAACTGCCGTTGGTAGCGCCGCTGCT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACCTTCGCCGCCGGGGTACCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAACCAGGTATTCAAGCATGCGGTGAACCGCATCAGGCAGGACGTGGCGACCGGCATG
CAGTTGCACTTTTCCATGCGCGCATCCGGCATTTTTCCCGGCATGGCGATCCAGATGACCGCCATCGGCGAAGAATCCGG
GGCCCTGGACGGCATGCTGGAAAAAGTCGCGATCCACTACGAGGAAGAAGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.679

100

0.657
  pilC Acinetobacter baylyi ADP1

55.882

100

0.563
  pilC Acinetobacter baumannii D1279779

55.392

100

0.558
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

42.928

99.506

0.427
  pilG Neisseria meningitidis 44/76-A

42.184

99.506

0.42
  pilC Vibrio cholerae strain A1552

42.347

96.79

0.41
  pilC Vibrio campbellii strain DS40M4

39.552

99.259

0.393

Multiple sequence alignment