Detailed information NTG0279975

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K10_RS26330
• Genome accession: NZ_CP027747
• Coordinates: 5819681..5820553 (+)
• Length: 290 a.a.
• NCBI ID: WP_101283594.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aureofaciens strain 66
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5814681..5825553

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K10_RS26315 (C4K10_5330)	-	5817036..5817392 (-)	357	WP_009050906.1	BON domain-containing protein	-
C4K10_RS26320 (C4K10_5331)	-	5817680..5818096 (-)	417	WP_009050907.1	pilin	-
C4K10_RS26325 (C4K10_5332)	pilC	5818461..5819678 (+)	1218	WP_124340763.1	type II secretion system F family protein	Machinery gene
C4K10_RS26330 (C4K10_5333)	pilD	5819681..5820553 (+)	873	WP_101283594.1	A24 family peptidase	Machinery gene
C4K10_RS26335 (C4K10_5334)	coaE	5820550..5821173 (+)	624	WP_009045669.1	dephospho-CoA kinase	-
C4K10_RS26340 (C4K10_5335)	yacG	5821170..5821373 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C4K10_RS26345 (C4K10_5336)	-	5821378..5821593 (-)	216	WP_009050911.1	hypothetical protein	-
C4K10_RS26350 (C4K10_5337)	-	5821659..5822348 (-)	690	WP_110177023.1	energy-coupling factor ABC transporter permease	-
C4K10_RS26355 (C4K10_5338)	-	5822345..5822812 (-)	468	WP_009050913.1	hypothetical protein	-
C4K10_RS26360 (C4K10_5339)	-	5823268..5824704 (+)	1437	WP_009050914.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32080.24 Da
• Isoelectric Point: 7.9954

>NTDB_id=279975 C4K10_RS26330 WP_101283594.1 5819681..5820553(+) (pilD) [Pseudomonas chlororaphis subsp. aureofaciens strain 66]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPISRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITGSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279975 C4K10_RS26330 WP_101283594.1 5819681..5820553(+) (pilD) [Pseudomonas chlororaphis subsp. aureofaciens strain 66]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCATTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCAGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAGCTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTTTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGTGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAACCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.169	97.931	0.521
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	51.273	94.828	0.486
pilD	Acinetobacter nosocomialis M2	50.545	94.828	0.479
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452