Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C4K26_RS25835 Genome accession   NZ_CP027713
Coordinates   5693861..5695078 (+) Length   405 a.a.
NCBI ID   WP_124352629.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain TAMOak81     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5688861..5700078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4K26_RS25820 (C4K26_5209) - 5689320..5692238 (+) 2919 WP_124352628.1 DUF748 domain-containing protein -
  C4K26_RS25825 (C4K26_5210) - 5692439..5692795 (-) 357 WP_009045666.1 BON domain-containing protein -
  C4K26_RS25830 (C4K26_5211) - 5693082..5693498 (-) 417 WP_007924673.1 pilin -
  C4K26_RS25835 (C4K26_5212) pilC 5693861..5695078 (+) 1218 WP_124352629.1 type II secretion system F family protein Machinery gene
  C4K26_RS25840 (C4K26_5213) pilD 5695081..5695953 (+) 873 WP_124352630.1 A24 family peptidase Machinery gene
  C4K26_RS25845 (C4K26_5214) coaE 5695950..5696573 (+) 624 WP_124352631.1 dephospho-CoA kinase -
  C4K26_RS25850 (C4K26_5215) yacG 5696570..5696773 (+) 204 WP_124352632.1 DNA gyrase inhibitor YacG -
  C4K26_RS25855 (C4K26_5216) - 5696778..5696993 (-) 216 WP_092420809.1 hypothetical protein -
  C4K26_RS25860 (C4K26_5217) - 5697059..5697748 (-) 690 WP_124352633.1 energy-coupling factor ABC transporter permease -
  C4K26_RS25865 (C4K26_5218) - 5697745..5698212 (-) 468 WP_124352634.1 FAD/FMN-containing dehydrogenase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44436.31 Da        Isoelectric Point: 10.4090

>NTDB_id=279129 C4K26_RS25835 WP_124352629.1 5693861..5695078(+) (pilC) [Pseudomonas chlororaphis strain TAMOak81]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLIRAQLRKQGINPARVRKKSSSLLQLTPPIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLLAELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLAGALLLSVFGLR
HARRRSPRFRHWLDVGLLKLPLVAPLMYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKQAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=279129 C4K26_RS25835 WP_124352629.1 5693861..5695078(+) (pilC) [Pseudomonas chlororaphis strain TAMOak81]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGATCAGGGCCCAGTTGCGCAAGCAAGGCATCAACCCGGCCAGGGTCAGGAAGAAATCCA
GCTCGCTGTTGCAGCTCACACCCCCGATCAAGGCCCGCGACATCAGCCTGTTCACCCGGCAGCTGGCGACCCTGATCAAG
GCCGGCGTGCCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGATAACCCGAACATGCGCAAACTGCTGGCCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGTTTCACCAGCGCACTACGCAAGAGGCCACGGTATTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAGCAGGCCGGGGCCCTGGAAACCCTGCTGGAGCGAGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACACGAATCCGCAAGGCCATGACCTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTGACGGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAGGGCTTCGGCGCGCAGTTGCCGGTGTTCACGCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTACTGGCGGGCGCGCTGTTGCTCAGTGTGTTCGGCCTGCGC
CATGCCCGCCGGCGCTCACCGCGCTTTCGCCACTGGCTGGACGTGGGCCTGCTGAAACTGCCGTTGGTAGCGCCACTGAT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACCTTCGCCGCCGGAGTGCCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAATCAGGTGTTCAAGCAGGCGGTGAACCGCATCAGGCAGGACGTGGCGACCGGCATG
CAGTTGCATTTTTCCATGCGCGCATCCGGCATTTTTCCCGGCATGGCCATCCAGATGACCGCCATCGGCGAAGAGTCCGG
GGCCCTGGACGGCATGCTGGAAAAGGTCGCGATCCACTATGAGGAAGAGGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAACCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.432

100

0.654
  pilC Acinetobacter baylyi ADP1

56.373

100

0.568
  pilC Acinetobacter baumannii D1279779

55.392

100

0.558
  pilC Legionella pneumophila strain ERS1305867

52.02

97.778

0.509
  pilG Neisseria gonorrhoeae MS11

42.68

99.506

0.425
  pilG Neisseria meningitidis 44/76-A

41.935

99.506

0.417
  pilC Vibrio cholerae strain A1552

42.857

96.79

0.415
  pilC Vibrio campbellii strain DS40M4

39.303

99.259

0.39

Multiple sequence alignment