Detailed information NTG0279130

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C4K26_RS25840
• Genome accession: NZ_CP027713
• Coordinates: 5695081..5695953 (+)
• Length: 290 a.a.
• NCBI ID: WP_124352630.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain TAMOak81
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5690081..5700953

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4K26_RS25825 (C4K26_5210)	-	5692439..5692795 (-)	357	WP_009045666.1	BON domain-containing protein	-
C4K26_RS25830 (C4K26_5211)	-	5693082..5693498 (-)	417	WP_007924673.1	pilin	-
C4K26_RS25835 (C4K26_5212)	pilC	5693861..5695078 (+)	1218	WP_124352629.1	type II secretion system F family protein	Machinery gene
C4K26_RS25840 (C4K26_5213)	pilD	5695081..5695953 (+)	873	WP_124352630.1	A24 family peptidase	Machinery gene
C4K26_RS25845 (C4K26_5214)	coaE	5695950..5696573 (+)	624	WP_124352631.1	dephospho-CoA kinase	-
C4K26_RS25850 (C4K26_5215)	yacG	5696570..5696773 (+)	204	WP_124352632.1	DNA gyrase inhibitor YacG	-
C4K26_RS25855 (C4K26_5216)	-	5696778..5696993 (-)	216	WP_092420809.1	hypothetical protein	-
C4K26_RS25860 (C4K26_5217)	-	5697059..5697748 (-)	690	WP_124352633.1	energy-coupling factor ABC transporter permease	-
C4K26_RS25865 (C4K26_5218)	-	5697745..5698212 (-)	468	WP_124352634.1	FAD/FMN-containing dehydrogenase	-
C4K26_RS25870 (C4K26_5219)	-	5698669..5700105 (+)	1437	WP_124352635.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32076.17 Da
• Isoelectric Point: 7.4002

>NTDB_id=279130 C4K26_RS25840 WP_124352630.1 5695081..5695953(+) (pilD) [Pseudomonas chlororaphis strain TAMOak81]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPDEPAGPIYNLLLPHSQCPHCGHPIR
PWENIPLLSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=279130 C4K26_RS25840 WP_124352630.1 5695081..5695953(+) (pilD) [Pseudomonas chlororaphis strain TAMOak81]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTCGGGT
TGCCCGACGAGCCTGCCGGGCCGATCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCGCACTGCGGGCACCCGATCCGC
CCCTGGGAAAACATCCCGCTGTTGAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCATGCCAGGCCCCGATCGGCCGGCG
CTACCCGCTGGTGGAACTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGGCT
TGATGCTGTTTCTGAGCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCCCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGTCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACCGGA
GCCCTGGCCGGGATCGCCATGCTGCGCCGCAACCGCGCGCAGATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.007	98.966	0.534
pilD	Vibrio campbellii strain DS40M4	51.408	97.931	0.503
pilD	Acinetobacter nosocomialis M2	50.554	93.448	0.472
pilD	Acinetobacter baumannii D1279779	50.554	93.448	0.472
pilD	Neisseria gonorrhoeae MS11	48.162	93.793	0.452