Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C6Q18_RS26170 Genome accession   NZ_CP027656
Coordinates   5835449..5836666 (+) Length   405 a.a.
NCBI ID   WP_106698652.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. piscium strain ZJU60     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5830449..5841666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Q18_RS26155 (C6Q18_26150) - 5830906..5833821 (+) 2916 WP_199796865.1 DUF748 domain-containing protein -
  C6Q18_RS26160 (C6Q18_26155) - 5834024..5834380 (-) 357 WP_025807489.1 BON domain-containing protein -
  C6Q18_RS26165 (C6Q18_26160) - 5834669..5835085 (-) 417 WP_106698651.1 pilin -
  C6Q18_RS26170 (C6Q18_26165) pilC 5835449..5836666 (+) 1218 WP_106698652.1 type II secretion system F family protein Machinery gene
  C6Q18_RS26175 (C6Q18_26170) pilD 5836669..5837541 (+) 873 WP_106698653.1 prepilin peptidase Machinery gene
  C6Q18_RS26180 (C6Q18_26175) coaE 5837538..5838161 (+) 624 WP_106698654.1 dephospho-CoA kinase -
  C6Q18_RS26185 (C6Q18_26180) yacG 5838158..5838361 (+) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  C6Q18_RS26190 (C6Q18_26185) - 5838366..5838581 (-) 216 WP_025807496.1 hypothetical protein -
  C6Q18_RS26195 (C6Q18_26190) - 5838647..5839336 (-) 690 WP_106698655.1 energy-coupling factor ABC transporter permease -
  C6Q18_RS26200 (C6Q18_26195) - 5839333..5839800 (-) 468 WP_106698656.1 FAD/FMN-containing dehydrogenase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44454.23 Da        Isoelectric Point: 10.2085

>NTDB_id=278653 C6Q18_RS26170 WP_106698652.1 5835449..5836666(+) (pilC) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
MAVKAAKVSVYLWEGTDRQGSKLCGELSGHNPSLIRAQLRKQGISPARVRKKSSSLFQRTPPIRARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLMAELKQDIAAGSSFTTALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLAGGLLLSVFGLR
HAHRHSPRFRQWLDVGLLKLPLVAPLMYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=278653 C6Q18_RS26170 WP_106698652.1 5835449..5836666(+) (pilC) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGTGCGGCGAATT
GAGCGGCCATAACCCCTCGCTGATCAGGGCCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGGTCAGGAAGAAATCCA
GTTCGCTGTTCCAGCGCACGCCGCCGATCAGGGCCCGCGACATCAGCCTGTTCACCCGGCAGTTGGCGACCCTGATCAAG
GCCGGCGTGCCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGACAACCCGAACATGCGTAAACTGATGGCCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGCTTCACCACCGCATTGCGCAAGAGGCCGCGCTACTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAACAGGCCGGGGCCCTGGAAACCCTGCTGGAGCGAGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACGCGCATCCGCAAGGCCATGACTTATCCCCTGGCGGTGATCTGCGTGGCGCTGGTGGTCACGGGCAT
TCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTCGGCGCGCAACTGCCGGTGTTCACCCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGCGGGCGGTCTGCTGCTCAGTGTGTTCGGCCTGCGC
CATGCCCACCGGCACTCACCGCGCTTTCGCCAGTGGCTGGACGTGGGTCTGCTGAAACTGCCGTTGGTAGCGCCGCTGAT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGTACCTTGTCCACCACCTTCGCCGCCGGGGTACCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAATCAGGTGTTCAAGCATGCGGTGAACCGCATCAGGCAGGACGTGGCGACCGGTATG
CAGTTGCATTTTTCCATGCGCGCGTCCGGCATCTTTCCCGGCATGGCCATCCAGATGACTGCCATCGGCGAAGAGTCCGG
GGCCCTGGACGGCATGCTGGAAAAGGTCGCGATCCACTATGAGGAAGAGGTCGATACCCTGGTCGACACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGTACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.185

100

0.652
  pilC Acinetobacter baylyi ADP1

55.637

100

0.56
  pilC Acinetobacter baumannii D1279779

54.657

100

0.551
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria gonorrhoeae MS11

41.687

99.506

0.415
  pilG Neisseria meningitidis 44/76-A

40.943

99.506

0.407
  pilC Vibrio cholerae strain A1552

41.582

96.79

0.402
  pilC Vibrio campbellii strain DS40M4

38.308

99.259

0.38

Multiple sequence alignment