Detailed information NTG0278654

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C6Q18_RS26175
• Genome accession: NZ_CP027656
• Coordinates: 5836669..5837541 (+)
• Length: 290 a.a.
• NCBI ID: WP_106698653.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. piscium strain ZJU60
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5831669..5842541

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C6Q18_RS26160 (C6Q18_26155)	-	5834024..5834380 (-)	357	WP_025807489.1	BON domain-containing protein	-
C6Q18_RS26165 (C6Q18_26160)	-	5834669..5835085 (-)	417	WP_106698651.1	pilin	-
C6Q18_RS26170 (C6Q18_26165)	pilC	5835449..5836666 (+)	1218	WP_106698652.1	type II secretion system F family protein	Machinery gene
C6Q18_RS26175 (C6Q18_26170)	pilD	5836669..5837541 (+)	873	WP_106698653.1	prepilin peptidase	Machinery gene
C6Q18_RS26180 (C6Q18_26175)	coaE	5837538..5838161 (+)	624	WP_106698654.1	dephospho-CoA kinase	-
C6Q18_RS26185 (C6Q18_26180)	yacG	5838158..5838361 (+)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
C6Q18_RS26190 (C6Q18_26185)	-	5838366..5838581 (-)	216	WP_025807496.1	hypothetical protein	-
C6Q18_RS26195 (C6Q18_26190)	-	5838647..5839336 (-)	690	WP_106698655.1	energy-coupling factor ABC transporter permease	-
C6Q18_RS26200 (C6Q18_26195)	-	5839333..5839800 (-)	468	WP_106698656.1	FAD/FMN-containing dehydrogenase	-
C6Q18_RS26205 (C6Q18_26200)	-	5840255..5841691 (+)	1437	WP_063433055.1	undecaprenyl-phosphate glucose phosphotransferase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32126.23 Da
• Isoelectric Point: 7.7036

>NTDB_id=278654 C6Q18_RS26175 WP_106698653.1 5836669..5837541(+) (pilD) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
MSLTEVLASYPLVFVASVLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHPIR
PWENIPVFSYLLLRGRCSACKAPIGRRYPLVELTCGLASAFVAWHFGFDWQAGLMLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFDLFVSLHDALWGAVAGYLCLWSVYWLFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGVAMLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITDSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=278654 C6Q18_RS26175 WP_106698653.1 5836669..5837541(+) (pilD) [Pseudomonas chlororaphis subsp. piscium strain ZJU60]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGGTGCTGGTCCTGGGCCTGATTGTCGGCAG
CTTCCTCAACGTGCTGATCTGGCGGCTGCCAAAGATGCTCGAGCGTGACTGGCATGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAACCTGCCGGGCCGACCTACAACCTGTTGCTCCCGCACTCCCAGTGCCCTCACTGCGCGCACCCGATCCGC
CCCTGGGAAAACATCCCAGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCAAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGACTGGCAGGCCGGCT
TGATGCTGTTCCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTA
CTGCCCCTGTTGTGGCTGGGGCTGATCGTCAACGGCTTCGACCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGCGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGG
GCCCTGGCCGGGGTCGCCATGCTGCGCCGCAACCGCGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.521	97.931	0.524
pilD	Vibrio campbellii strain DS40M4	51.773	97.241	0.503
pilD	Acinetobacter baumannii D1279779	50.185	93.448	0.469
pilD	Acinetobacter nosocomialis M2	49.446	93.448	0.462
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448