Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SSA_RS09535 Genome accession   NC_009009
Coordinates   1940275..1942260 (-) Length   661 a.a.
NCBI ID   WP_011837459.1    Uniprot ID   A3CQ68
Organism   Streptococcus sanguinis SK36     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1935275..1947260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS09515 (SSA_1944) amiF 1935775..1936701 (-) 927 WP_002893618.1 ATP-binding cassette domain-containing protein Regulator
  SSA_RS09520 (SSA_1945) amiE 1936712..1937779 (-) 1068 WP_002902455.1 ABC transporter ATP-binding protein Regulator
  SSA_RS09525 (SSA_1946) amiD 1937788..1938714 (-) 927 WP_002893621.1 oligopeptide ABC transporter permease OppC Regulator
  SSA_RS09530 (SSA_1947) amiC 1938714..1940210 (-) 1497 WP_002902452.1 ABC transporter permease Regulator
  SSA_RS09535 (SSA_1948) amiA 1940275..1942260 (-) 1986 WP_011837459.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS09540 (SSA_1949) amiA3 1942493..1944463 (-) 1971 WP_011837460.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS09545 (SSA_1950) amiA 1944656..1946611 (-) 1956 WP_033179211.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 73402.41 Da        Isoelectric Point: 4.6836

>NTDB_id=27543 SSA_RS09535 WP_011837459.1 1940275..1942260(-) (amiA) [Streptococcus sanguinis SK36]
MKQSKVLALAGVTLLAAGFLAACSGSKPNTKSGSSDSSNTFNYIYETDPENLNYLTSSKAATTDLTANVIDGLLENDQYG
NLVPSMAEEWTVSPDGKTYTYKLRKNAKWYTSEGEEYADVTAEDFVTGLKYAADNKSETLYLVQDSVKGLKDYISGKIDF
SEVGIKAVDDHTVEYTLNEPESFWNSKTTMGILYPVNKDFLKNQGDKFAQATDPTSLLYNGPFLLKSLTSKSEIQFEKNP
NYWDKENVHVDAVKLSFYDGQDQGKPAEQFSQGALTTARLFPTSATYEKVEKDFKDNIVYTPQDASTFLVGTNIDRQSYN
HTAKTSEAQKTSTKKALLNKDFRQALTFAFNRESYASQINGKDGADKLLRNLYIPPTFVQAGDKSFGDLVKEKVVTYGDE
WKDVDFSDGQDGLYNENKAKAEFAKAKEALKADGVEFPIHLDIPVDQTATSKVQRVQSLKQSIEKTLGTDNVVIDVHQLS
KDEVTNITLFAPSAAEEDWDISDNVGWSPDYQDPSTYLDVIKPGGENTKTFLGFDGTDNAAAKQVGLDEYTKLVDEAGAE
KQDLNKRYEKYAAAQAWLTDSALLIPVTSRTGRPTLTKVVPFSAPFAWSGAKAREAASYKYMKLQDEPVTTKDYNSAQEK
WNKERAESNKKAQEELADHVK

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=27543 SSA_RS09535 WP_011837459.1 1940275..1942260(-) (amiA) [Streptococcus sanguinis SK36]
ATGAAACAAAGTAAAGTCCTTGCGCTAGCAGGAGTTACTCTTCTTGCAGCTGGCTTTCTTGCAGCTTGCTCAGGCTCTAA
GCCAAACACAAAGTCAGGCAGCTCAGACTCTTCTAACACCTTTAATTATATCTACGAGACAGATCCTGAAAACTTGAACT
ATCTCACTTCAAGTAAGGCTGCTACAACAGACTTGACAGCCAATGTCATTGACGGTCTTTTAGAAAACGACCAATATGGA
AACTTGGTTCCTTCAATGGCAGAGGAATGGACTGTATCCCCAGATGGGAAAACTTACACTTACAAACTTCGCAAAAATGC
TAAGTGGTATACTTCCGAAGGTGAAGAATACGCAGATGTCACAGCAGAAGACTTTGTTACAGGTCTTAAGTATGCAGCAG
ACAATAAATCTGAAACACTGTACTTGGTTCAGGATTCTGTCAAAGGGCTTAAGGACTATATTTCTGGGAAGATTGATTTC
TCAGAAGTAGGGATCAAAGCGGTCGATGATCATACCGTTGAGTATACTCTTAATGAGCCAGAAAGCTTCTGGAACTCTAA
GACTACAATGGGGATTCTCTACCCAGTAAACAAAGACTTTTTGAAAAACCAAGGTGATAAGTTCGCTCAAGCAACTGATC
CAACAAGCTTGCTTTACAACGGACCTTTCTTGCTCAAATCATTGACTTCAAAATCTGAAATCCAATTTGAGAAGAATCCT
AATTATTGGGACAAAGAAAATGTTCACGTAGATGCAGTTAAACTCTCTTTCTATGATGGACAAGATCAAGGAAAACCTGC
TGAGCAGTTCAGCCAAGGCGCATTGACAACAGCCAGACTTTTCCCAACTAGTGCGACTTATGAAAAGGTTGAAAAAGACT
TTAAAGATAATATCGTCTATACACCTCAAGATGCCTCAACTTTCTTAGTAGGTACTAACATTGATCGCCAGTCTTATAAT
CATACAGCTAAGACATCAGAAGCTCAAAAGACTTCAACTAAGAAAGCCTTGCTTAACAAGGACTTCCGTCAGGCTTTGAC
CTTTGCCTTCAATCGTGAGTCCTATGCATCTCAGATTAATGGTAAGGACGGAGCAGACAAACTTCTTCGTAACCTTTACA
TCCCACCTACATTTGTGCAGGCTGGTGACAAGTCCTTCGGTGACTTAGTTAAGGAAAAAGTAGTAACTTATGGCGACGAA
TGGAAAGACGTTGACTTCTCAGATGGTCAAGATGGTCTCTATAACGAGAACAAAGCAAAGGCTGAATTCGCTAAAGCAAA
AGAAGCTTTGAAAGCTGATGGAGTGGAATTCCCAATTCATCTGGACATTCCGGTTGATCAAACAGCTACTTCTAAAGTAC
AGCGCGTTCAATCCCTCAAGCAATCCATTGAGAAGACTTTGGGAACAGATAATGTTGTGATTGATGTTCACCAATTGTCT
AAGGATGAAGTGACTAACATTACCTTGTTTGCTCCTTCTGCTGCTGAAGAGGACTGGGATATTTCAGATAATGTCGGCTG
GTCTCCGGACTATCAAGATCCATCCACTTATCTAGATGTTATCAAACCTGGTGGTGAAAACACCAAGACCTTCTTAGGAT
TTGATGGCACAGATAATGCCGCAGCGAAACAAGTTGGTTTGGATGAATATACCAAGCTGGTTGACGAAGCTGGTGCAGAA
AAGCAAGATTTGAACAAGCGTTATGAAAAATATGCGGCTGCTCAGGCTTGGCTGACTGATAGTGCTTTGTTGATTCCGGT
AACTTCTAGAACAGGTCGTCCAACCTTGACTAAGGTAGTGCCTTTCTCAGCACCGTTTGCTTGGTCTGGTGCTAAGGCGC
GTGAAGCAGCAAGTTATAAATACATGAAATTGCAGGATGAGCCTGTAACGACAAAAGATTATAATAGCGCTCAGGAAAAA
TGGAATAAAGAACGTGCGGAATCTAATAAAAAAGCTCAAGAAGAATTAGCAGACCACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(82-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CQ68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.392

100

0.607
  amiA3 Streptococcus thermophilus LMD-9

59.789

100

0.601
  amiA3 Streptococcus thermophilus LMG 18311

59.488

100

0.598

Multiple sequence alignment