Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SSA_RS09520 Genome accession   NC_009009
Coordinates   1936712..1937779 (-) Length   355 a.a.
NCBI ID   WP_002902455.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931712..1942779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS09515 (SSA_1944) amiF 1935775..1936701 (-) 927 WP_002893618.1 ATP-binding cassette domain-containing protein Regulator
  SSA_RS09520 (SSA_1945) amiE 1936712..1937779 (-) 1068 WP_002902455.1 ABC transporter ATP-binding protein Regulator
  SSA_RS09525 (SSA_1946) amiD 1937788..1938714 (-) 927 WP_002893621.1 oligopeptide ABC transporter permease OppC Regulator
  SSA_RS09530 (SSA_1947) amiC 1938714..1940210 (-) 1497 WP_002902452.1 ABC transporter permease Regulator
  SSA_RS09535 (SSA_1948) amiA 1940275..1942260 (-) 1986 WP_011837459.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39487.18 Da        Isoelectric Point: 4.7521

>NTDB_id=27540 SSA_RS09520 WP_002902455.1 1936712..1937779(-) (amiE) [Streptococcus sanguinis SK36]
MTKNENVILTARDIVVEFDVRDRVLTAIRGVSLDLIEGEVLAIVGESGSGKSVLTKTFTGMLEENGRVAQGTIDYRGKDL
TTLRSNKDWEPIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKSAKEAKKMAIDYMSKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKSLQQEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYEPKHPYTWSLLSSLPQLADANGALYSIPGTPPSLYSPIKGDAFALRSDYAMSIDFEEEAPAFKVSDTHWAK
TWLLHEDAPKVDKPEIIENLHEKIRSKMGFNQLEA

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=27540 SSA_RS09520 WP_002902455.1 1936712..1937779(-) (amiE) [Streptococcus sanguinis SK36]
ATGACAAAGAATGAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTCGATGTTCGCGATCGTGTCTTAACCGC
CATTCGTGGAGTCTCTCTGGACTTGATTGAAGGTGAAGTACTGGCTATTGTTGGTGAATCTGGTTCAGGTAAGTCTGTTT
TAACCAAGACATTTACTGGTATGTTAGAAGAAAATGGCCGTGTGGCCCAAGGAACCATTGACTACCGCGGTAAAGATTTG
ACAACTCTTCGTAGTAACAAAGATTGGGAGCCGATTCGTGGTGCAAAAATTGCGACTATTTTCCAAGATCCGATGACGAG
CTTGGATCCCATCAATACGATTGGAAGCCAGATTACAGAAGTCATTATCAAGCACCAAGGAAAATCAGCCAAAGAAGCTA
AGAAAATGGCCATCGATTATATGAGCAAGGTTGGGATTCCAGATGCGGAAAAACGTTTCGAAGAATATCCTTTCCAATAC
TCGGGTGGTATGCGTCAGCGGATTGTTATTGCTATTGCTTTGGCTTGCCGTCCTGATATTCTTATCTGTGATGAGCCGAC
AACGGCCCTCGATGTAACGATTCAAGCGCAAATCATTGACTTGCTCAAATCCTTGCAGCAAGAATATCATTTCACAACCA
TCTTTATTACGCACGACCTTGGTGTTGTGGCTAGTATTGCAGATAAGGTTGCGGTCATGTATGCCGGTGAAATTGTAGAA
TACGGCACAGTTGAAGAAATCTTCTACGAGCCAAAACATCCTTATACATGGAGTTTGCTATCCAGCTTGCCTCAGTTGGC
AGATGCGAATGGTGCGCTTTACTCGATTCCTGGAACTCCGCCGTCACTTTATTCACCAATCAAAGGGGATGCCTTTGCTT
TGCGTTCTGACTATGCCATGTCTATTGACTTTGAAGAAGAAGCACCGGCTTTCAAGGTCTCAGATACTCATTGGGCAAAG
ACTTGGCTCCTGCACGAAGATGCGCCTAAGGTTGATAAACCAGAGATTATCGAAAACCTACATGAAAAAATTCGTTCAAA
AATGGGCTTCAATCAATTAGAAGCTTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.686

99.437

0.862
  amiE Streptococcus thermophilus LMG 18311

86.119

99.437

0.856
  amiE Streptococcus thermophilus LMD-9

86.119

99.437

0.856
  oppD Streptococcus mutans UA159

57.31

96.338

0.552

Multiple sequence alignment