Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SSA_RS09545 Genome accession   NC_009009
Coordinates   1944656..1946611 (-) Length   651 a.a.
NCBI ID   WP_033179211.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1939656..1951611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS09535 (SSA_1948) amiA 1940275..1942260 (-) 1986 WP_011837459.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS09540 (SSA_1949) amiA3 1942493..1944463 (-) 1971 WP_011837460.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS09545 (SSA_1950) amiA 1944656..1946611 (-) 1956 WP_033179211.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS09550 (SSA_1951) pbp3 1946904..1948163 (+) 1260 WP_011837462.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  SSA_RS09555 (SSA_1952) sufB 1948302..1949714 (-) 1413 WP_002893631.1 Fe-S cluster assembly protein SufB -
  SSA_RS09560 (SSA_1953) sufU 1949732..1950169 (-) 438 WP_002917692.1 Fe-S cluster assembly sulfur transfer protein SufU -
  SSA_RS09565 (SSA_1954) - 1950156..1951388 (-) 1233 WP_002917693.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 651 a.a.        Molecular weight: 72244.93 Da        Isoelectric Point: 4.5803

>NTDB_id=27545 SSA_RS09545 WP_033179211.1 1944656..1946611(-) (amiA) [Streptococcus sanguinis SK36]
MKKSKWLAITGLTVVSALILAACGNSSASSTYSYVYLSDPDTLDYVNSNRATTSDVITNLVDGLLENDKYGNLVPSIAED
WTVSKDGLTYTYKLRKDAKWYTSDGEEYAEVKAQDFVAGLKHAADENSEALPIVQSSIKGLDAYVKGESKDFSTVGVKAV
DDHTVEYTLNQPESYWNSKTTMGILFPINEDFLKSQGKDFGTVKPSSILYNGPYVLKAFTSKSVIEYAKNQNYWDKDNVK
VENIKLTYFDGSDQESLIRNFSDGAYSQARLYPTSSNYASVEKQYKDNIIYTPQNSTSFYFAFNLNRKTYNHSSKTSDAQ
KASTTAAIQNKDFRQAINFAFDRTSFGAQMNGKDGATKLIRSLLVPPSFVQVDGKDFSDVVESQLSSYGDEWNGIKLADA
QDSIYNADKAKAEFAKAKETLQAEGVEFPIHIDVPVDQSDKVLVQRTNSFKQSVESALGQENVVIDVQQMSTDDFDNSAY
FAETAAQKDYDLNMSGWSADYQDPSTYLNIFNPETGDAADNIGIEKGKNADVANKVGLNEYKALLDEADQEKQDTDARYT
KYAAAQAWLTDSSIVIPSVSGGGSPVVQKVVPFTKSYSYVGIKGDAYVFKNMELQNDIVTAKDYEAALKKWEKEKEASNK
KAQEDLEKHIK

Nucleotide


Download         Length: 1956 bp        

>NTDB_id=27545 SSA_RS09545 WP_033179211.1 1944656..1946611(-) (amiA) [Streptococcus sanguinis SK36]
ATGAAAAAATCTAAATGGTTGGCCATTACTGGACTGACAGTCGTGTCAGCACTGATTTTAGCCGCTTGCGGAAATTCCAG
TGCAAGCAGTACCTATTCTTATGTCTATTTGAGTGACCCTGATACTTTGGACTATGTCAATTCAAATCGAGCTACTACGT
CCGATGTTATTACAAACTTGGTGGACGGCCTTTTAGAAAATGATAAATACGGCAATTTGGTTCCATCTATTGCGGAAGAC
TGGACTGTTTCAAAGGATGGTTTGACCTATACCTATAAGCTTCGTAAAGATGCTAAGTGGTACACATCAGATGGTGAAGA
ATATGCAGAGGTTAAAGCACAAGACTTTGTAGCAGGTTTGAAGCACGCGGCAGATGAAAATTCTGAAGCTCTTCCTATCG
TCCAAAGCTCTATCAAAGGCTTGGATGCCTATGTCAAAGGAGAGTCTAAAGACTTCTCAACAGTTGGAGTAAAAGCAGTT
GATGACCACACGGTCGAATACACGCTCAACCAGCCAGAAAGCTACTGGAACTCTAAGACGACCATGGGGATTCTGTTCCC
CATCAATGAGGATTTCTTGAAGTCACAAGGCAAAGATTTTGGTACCGTAAAACCTTCTTCCATTCTTTATAACGGACCTT
ATGTTCTGAAAGCATTCACTTCTAAGTCTGTCATTGAATATGCTAAAAACCAGAACTATTGGGATAAGGACAATGTCAAG
GTTGAAAATATAAAACTGACTTATTTTGATGGTTCGGATCAGGAATCCTTGATCCGCAACTTCTCAGACGGGGCTTATTC
TCAAGCACGGCTTTACCCTACGAGCTCTAACTATGCTTCTGTAGAAAAGCAGTACAAAGACAATATTATTTACACACCAC
AGAATTCAACTAGTTTCTATTTTGCTTTCAATCTGAATCGTAAGACTTATAATCATTCGTCTAAGACATCAGATGCTCAA
AAGGCATCAACTACAGCTGCTATTCAAAATAAAGACTTCCGTCAGGCGATTAACTTTGCCTTTGACCGGACATCTTTTGG
AGCTCAGATGAATGGTAAAGATGGAGCGACTAAACTCATCCGTAGCTTGCTTGTTCCTCCTAGCTTTGTGCAGGTGGACG
GTAAGGACTTCTCTGATGTAGTAGAGAGCCAACTTTCATCTTATGGAGATGAGTGGAATGGCATTAAGCTGGCGGATGCT
CAGGATAGTATCTACAATGCTGATAAAGCCAAGGCGGAATTTGCCAAGGCAAAAGAAACCTTGCAAGCTGAAGGTGTAGA
ATTCCCAATCCATATTGACGTCCCTGTCGATCAGTCTGACAAGGTTTTGGTACAACGGACGAACTCCTTCAAACAGTCTG
TCGAATCAGCGCTTGGCCAAGAAAATGTCGTTATTGATGTTCAGCAAATGTCAACAGATGACTTTGATAATTCTGCCTAC
TTTGCAGAAACAGCAGCTCAGAAAGACTACGATCTCAACATGTCTGGCTGGTCAGCAGACTACCAAGATCCATCAACTTA
TCTGAATATCTTTAACCCTGAAACAGGTGATGCTGCAGATAATATTGGTATAGAAAAAGGGAAAAATGCTGATGTGGCAA
ATAAGGTTGGCTTGAATGAATACAAGGCTTTGCTGGATGAAGCTGATCAAGAAAAACAAGATACAGATGCTCGTTACACC
AAGTACGCAGCAGCTCAGGCTTGGTTGACGGATAGCTCCATTGTTATTCCTAGTGTTTCTGGTGGTGGTTCACCAGTCGT
TCAGAAGGTTGTGCCATTTACCAAGTCTTACTCTTATGTCGGAATTAAAGGAGATGCCTATGTCTTTAAGAACATGGAGC
TCCAAAATGATATTGTTACAGCTAAAGACTATGAAGCGGCTCTTAAGAAATGGGAAAAAGAAAAGGAAGCATCCAATAAA
AAAGCCCAAGAAGACTTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(73-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.686

100

0.582
  amiA3 Streptococcus thermophilus LMD-9

56.297

100

0.57
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.567

Multiple sequence alignment