Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SSA_RS09540 Genome accession   NC_009009
Coordinates   1942493..1944463 (-) Length   656 a.a.
NCBI ID   WP_011837460.1    Uniprot ID   A3CQ69
Organism   Streptococcus sanguinis SK36     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1937493..1949463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS09525 (SSA_1946) amiD 1937788..1938714 (-) 927 WP_002893621.1 oligopeptide ABC transporter permease OppC Regulator
  SSA_RS09530 (SSA_1947) amiC 1938714..1940210 (-) 1497 WP_002902452.1 ABC transporter permease Regulator
  SSA_RS09535 (SSA_1948) amiA 1940275..1942260 (-) 1986 WP_011837459.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS09540 (SSA_1949) amiA3 1942493..1944463 (-) 1971 WP_011837460.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS09545 (SSA_1950) amiA 1944656..1946611 (-) 1956 WP_033179211.1 peptide ABC transporter substrate-binding protein Regulator
  SSA_RS09550 (SSA_1951) pbp3 1946904..1948163 (+) 1260 WP_011837462.1 D-alanyl-D-alanine carboxypeptidase PBP3 -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72556.08 Da        Isoelectric Point: 4.4974

>NTDB_id=27544 SSA_RS09540 WP_011837460.1 1942493..1944463(-) (amiA3) [Streptococcus sanguinis SK36]
MKTSKLAAAAGLVILSAGILAACSFGGSNSSGKNYSYVYTSDPDTLDYTVSNKRATNEIMANVVDGLLESDKYGNLVPSL
AEDWTVSKDGLTYTYKLREGVKWYTSDGEEYADVTAKDFVTSLKHAADSKSDGLYIVQKSIKGLDDYVNGKITDFSQVGV
KAVDDSTVQYTLNQPESFWNSKTTMGILFPINEEFLKSKGDKFAQGTDPTSVLYNGPFILKSITSKSQISLEKNPNYWDK
EKVKIDTVKFSYYDGQDTESLVRGFSDGNYTIARLFPNSSNFASVKKQYGDNIVYTPQGSGTFVVTTNIDRQSYEHTSKT
TDAQKSSTKKALLNKDFRQALLFAFDRTAYSAQTNGEEAADKQLRNTFVPPTFVQANGKEFGSIVEENLASYGDEWKGVK
LDDAQDGLYNPEKAKAEFAKAKEALQAEGVEFPIHLDIPVSSADTNGVKGVQSLKQSIEANLGSDNVVIDIQQMTDDELN
NITYFATSASQEDWDLNNNLGWSPDYNDPSSYLEITGSKTGENVDSYFGFDPGTDNAAAKEAGFEEYDKLLEDAASENED
INKRYEKYAAAQAWLTDSALLMPAWSSGATPSVRKVVPFSGPFAWTGNKGEYSFKYVEIQDKPITTKEYEKAREKWAKEK
EESNKKAQEELAEHIK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=27544 SSA_RS09540 WP_011837460.1 1942493..1944463(-) (amiA3) [Streptococcus sanguinis SK36]
ATGAAAACATCTAAGTTAGCTGCAGCTGCTGGGCTTGTCATTCTCTCTGCAGGAATTTTGGCTGCCTGTTCGTTTGGTGG
TTCCAATTCATCTGGGAAAAACTATAGCTATGTTTATACCTCAGATCCAGATACACTGGATTACACTGTGTCCAATAAGC
GGGCAACCAATGAGATTATGGCTAATGTAGTGGATGGTTTGCTAGAAAGCGATAAGTATGGTAACTTAGTGCCTTCTCTA
GCGGAAGATTGGACCGTTTCAAAAGATGGTCTGACCTATACTTATAAGCTTCGTGAGGGAGTGAAGTGGTATACTTCTGA
TGGTGAAGAGTATGCAGATGTGACTGCTAAGGACTTTGTGACCAGTCTGAAGCATGCCGCAGACAGCAAGTCTGATGGTC
TCTATATCGTTCAAAAATCCATTAAAGGCTTGGATGACTATGTCAATGGTAAAATAACTGACTTCTCCCAAGTTGGTGTT
AAGGCGGTGGATGATTCTACTGTTCAATACACTCTCAATCAGCCAGAAAGTTTCTGGAATTCTAAGACAACCATGGGGAT
TCTTTTCCCGATTAACGAAGAATTCCTGAAATCAAAAGGTGACAAATTTGCTCAGGGGACAGATCCAACCAGTGTTCTCT
ATAACGGTCCGTTTATCTTGAAATCTATCACCTCGAAATCTCAAATTAGCTTAGAGAAGAATCCTAACTATTGGGATAAG
GAAAAGGTGAAAATTGATACTGTCAAATTCTCTTACTATGATGGTCAAGATACAGAATCTCTGGTGCGTGGCTTCTCTGA
CGGCAATTATACCATCGCTCGTCTTTTCCCAAATAGCTCCAACTTTGCCAGTGTGAAGAAACAGTACGGCGACAATATCG
TCTACACTCCTCAAGGTTCAGGAACCTTCGTCGTTACAACTAATATTGACCGTCAGTCTTACGAGCATACTTCTAAGACA
ACGGATGCACAGAAATCGTCCACTAAGAAAGCACTGCTCAATAAAGATTTCCGTCAGGCTCTGCTTTTTGCCTTTGACCG
TACTGCCTATTCTGCACAAACCAATGGCGAAGAGGCAGCAGACAAGCAACTTCGTAATACCTTTGTTCCGCCAACCTTTG
TTCAAGCTAATGGCAAAGAGTTCGGCAGCATTGTAGAAGAAAATCTGGCTAGCTACGGTGATGAGTGGAAGGGAGTCAAA
TTAGACGACGCTCAGGATGGCCTTTATAATCCAGAAAAAGCCAAGGCAGAATTTGCCAAAGCCAAAGAAGCGCTGCAGGC
AGAAGGAGTGGAATTCCCAATTCATCTGGACATTCCAGTTAGCTCAGCAGATACCAATGGCGTTAAGGGTGTTCAGTCAC
TGAAGCAGTCTATCGAAGCTAATCTTGGCTCTGACAATGTGGTGATTGATATTCAGCAGATGACAGATGATGAGTTGAAT
AACATCACCTACTTTGCGACCTCAGCATCTCAAGAAGACTGGGACTTGAATAATAATCTCGGCTGGAGTCCAGATTATAA
CGATCCTTCTTCTTATCTGGAAATCACTGGATCTAAGACTGGTGAGAATGTTGACAGTTACTTTGGTTTTGACCCTGGAA
CGGATAATGCAGCAGCTAAAGAGGCTGGCTTTGAAGAGTATGACAAGCTCTTGGAAGACGCTGCTTCAGAAAACGAGGAC
ATTAACAAACGTTACGAAAAGTATGCAGCAGCTCAGGCTTGGCTGACAGACAGTGCCCTGTTAATGCCGGCATGGTCATC
TGGTGCAACACCAAGTGTCCGTAAGGTTGTTCCATTCTCAGGACCATTTGCTTGGACTGGAAACAAGGGTGAATACAGCT
TTAAATATGTTGAAATCCAAGATAAACCAATAACGACTAAAGAATATGAGAAAGCGCGTGAAAAATGGGCAAAAGAAAAG
GAAGAATCCAATAAAAAAGCTCAAGAAGAACTCGCGGAACATATCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3CQ69

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.939

100

0.602
  amiA3 Streptococcus thermophilus LMG 18311

59.181

100

0.595
  amiA Streptococcus salivarius strain HSISS4

58.967

100

0.591

Multiple sequence alignment