Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   SSA_RS03615 Genome accession   NC_009009
Coordinates   700866..701546 (+) Length   226 a.a.
NCBI ID   WP_011836677.1    Uniprot ID   -
Organism   Streptococcus sanguinis SK36     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 695866..706546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSA_RS03595 (SSA_0711) - 695975..696721 (-) 747 WP_002912006.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  SSA_RS03600 (SSA_0712) - 696851..699190 (-) 2340 WP_002912007.1 cation-translocating P-type ATPase -
  SSA_RS03605 (SSA_0713) - 699348..700088 (+) 741 WP_002912008.1 lysophospholipid acyltransferase family protein -
  SSA_RS03610 (SSA_0714) - 700161..700709 (+) 549 WP_002912009.1 HXXEE domain-containing protein -
  SSA_RS03615 (SSA_0715) comEA/celA/cilE 700866..701546 (+) 681 WP_011836677.1 helix-hairpin-helix domain-containing protein Machinery gene
  SSA_RS03620 (SSA_0716) comEC/celB 701530..703770 (+) 2241 WP_011836678.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  SSA_RS03625 (SSA_0718) - 703901..704995 (+) 1095 WP_011836679.1 DUF805 domain-containing protein -
  SSA_RS03630 (SSA_0720) holA 705246..706292 (+) 1047 WP_011836680.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 23905.68 Da        Isoelectric Point: 4.7351

>NTDB_id=27515 SSA_RS03615 WP_011836677.1 700866..701546(+) (comEA/celA/cilE) [Streptococcus sanguinis SK36]
MLEEIIEKLKEYKLFVGLAVVGAVLGGFFLIKGNHQPQNQVAALSQEITSSSSSADEESEKIVPKAKADEEESEQVTVDI
KGAVKNPGVYELRAGARVHEAIQKAGGLTADAEAKSINQAQKLTDEAVIYVAKIGEEGADVTQGGQHQAGASDSASASGG
KSDKVNLNTATEAELQTISGIGQKRASDIIAYRESNGRFKSVDDLKKVSGIGDKTLEKLKEYVTVD

Nucleotide


Download         Length: 681 bp        

>NTDB_id=27515 SSA_RS03615 WP_011836677.1 700866..701546(+) (comEA/celA/cilE) [Streptococcus sanguinis SK36]
ATGCTTGAAGAAATCATTGAAAAGCTAAAAGAATACAAGCTCTTTGTCGGTCTGGCAGTAGTTGGCGCTGTGCTAGGTGG
TTTTTTCCTCATCAAAGGAAATCATCAACCGCAAAATCAGGTAGCCGCCTTGAGCCAAGAAATTACTTCCTCATCCAGCT
CAGCTGATGAAGAAAGCGAAAAGATTGTCCCTAAAGCTAAGGCGGACGAAGAGGAGAGTGAGCAGGTCACTGTGGATATT
AAAGGCGCAGTTAAGAATCCTGGTGTCTATGAGCTGAGAGCAGGAGCGAGAGTCCATGAAGCCATCCAAAAAGCTGGCGG
ATTGACAGCAGACGCCGAGGCTAAGTCCATTAATCAGGCACAAAAATTAACGGATGAAGCAGTAATCTATGTGGCAAAGA
TTGGTGAAGAAGGAGCCGATGTCACACAGGGTGGCCAGCATCAAGCAGGAGCTTCTGATTCTGCTAGTGCTAGTGGTGGA
AAGTCAGACAAGGTCAATCTAAATACGGCGACAGAGGCTGAATTACAGACCATTTCAGGCATCGGACAGAAGCGAGCTTC
TGACATCATAGCCTACCGCGAAAGCAATGGCCGCTTCAAGTCAGTAGATGATCTGAAAAAAGTGTCAGGGATTGGAGATA
AGACCTTAGAAAAGCTGAAAGAATATGTCACAGTTGATTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(162-224)

SLBB domain (SLBB)

(78-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50

100

0.513
  comEA/celA/cilE Streptococcus pneumoniae Rx1

49.569

100

0.509
  comEA/celA/cilE Streptococcus pneumoniae D39

49.569

100

0.509
  comEA/celA/cilE Streptococcus pneumoniae R6

49.569

100

0.509
  comEA/celA/cilE Streptococcus mitis NCTC 12261

50.222

99.558

0.5
  comEA/celA/cilE Streptococcus mitis SK321

48.276

100

0.496
  comEA Streptococcus thermophilus LMD-9

48.276

100

0.496
  comEA Bacillus subtilis subsp. subtilis str. 168

44.344

97.788

0.434
  comEA Lactococcus lactis subsp. cremoris KW2

40.444

99.558

0.403
  comEA Latilactobacillus sakei subsp. sakei 23K

34.855

100

0.372

Multiple sequence alignment