Detailed information NTG0275084

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: C5695_RS20705
• Genome accession: NZ_CP027116
• Coordinates: 3412367..3412948 (-)
• Length: 193 a.a.
• NCBI ID: WP_336470382.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain 145
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3407367..3417948

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5695_RS17725 (C5695_17790)	fliW	3407500..3407934 (-)	435	WP_117732066.1	flagellar assembly protein FliW	-
C5695_RS17730 (C5695_17795)	-	3407963..3408541 (-)	579	WP_117732068.1	DUF6470 family protein	-
C5695_RS17735 (C5695_17800)	flgL	3408590..3409501 (-)	912	WP_117732070.1	flagellar hook-associated protein FlgL	-
C5695_RS17740 (C5695_17805)	flgK	3409511..3411031 (-)	1521	WP_117732072.1	flagellar hook-associated protein FlgK	-
C5695_RS17745 (C5695_17810)	-	3411047..3411529 (-)	483	WP_117732074.1	flagellar protein FlgN	-
C5695_RS17750 (C5695_17815)	flgM	3411548..3411811 (-)	264	WP_117732076.1	flagellar biosynthesis anti-sigma factor FlgM	-
C5695_RS17755 (C5695_17820)	-	3411891..3412310 (-)	420	WP_117732078.1	TIGR03826 family flagellar region protein	-
C5695_RS20705 (C5695_17825)	comFC	3412367..3412948 (-)	582	WP_336470382.1	ComF family protein	Machinery gene
C5695_RS17765 (C5695_17830)	-	3413050..3413343 (-)	294	WP_117732082.1	late competence development ComFB family protein	-
C5695_RS17770 (C5695_17835)	comFA	3413393..3414772 (-)	1380	WP_272866845.1	DEAD/DEAH box helicase	Machinery gene
C5695_RS17775 (C5695_17840)	-	3414893..3415735 (-)	843	WP_117732084.1	DegV family protein	-
C5695_RS17780 (C5695_17845)	degU	3415953..3416642 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
C5695_RS17785 (C5695_17850)	degS	3416707..3417882 (-)	1176	WP_117732086.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 193 a.a.
• Molecular weight: 22048.61 Da
• Isoelectric Point: 10.4755

>NTDB_id=275084 C5695_RS20705 WP_336470382.1 3412367..3412948(-) (comFC) [Bacillus pumilus strain 145]
MKIQQPICPTCGRAQSNDHLCLDCSIWKNRSDSHQVLEKNRSVYAYNDLMKDVLTRFKFRGDTALAELFKRDVQVAFKRS
FSFKESVLIPIPLSNDRLKERGFNQSVILASLIGQPILQPLVKVHQSKQSKKKKHERLHQKGMFQIKQTDGIVQRNIILI
DDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 582 bp

>NTDB_id=275084 C5695_RS20705 WP_336470382.1 3412367..3412948(-) (comFC) [Bacillus pumilus strain 145]
GTGAAAATTCAACAACCGATTTGTCCAACTTGCGGCAGGGCACAGTCAAATGATCATTTGTGTCTAGACTGTTCCATATG
GAAAAACCGCTCTGACTCTCATCAAGTACTTGAGAAAAATAGATCTGTTTATGCTTACAACGATTTGATGAAAGATGTCC
TTACACGCTTTAAATTTCGTGGTGATACGGCTTTAGCCGAGCTTTTTAAACGTGATGTACAAGTAGCCTTTAAGCGTTCC
TTTTCATTCAAAGAATCTGTACTGATCCCAATTCCATTAAGTAATGATAGGCTAAAGGAAAGAGGATTTAATCAGTCCGT
CATACTTGCTTCTTTGATTGGTCAGCCCATATTGCAACCACTTGTAAAAGTACATCAAAGCAAGCAGTCCAAGAAAAAGA
AACATGAACGCTTACATCAAAAAGGAATGTTTCAAATTAAGCAGACAGATGGGATTGTACAAAGGAATATCATTTTAATT
GACGATATCTATACAACGGGGGCGACTATTTATGATGCGGCAAGAATTTTAAAAGAAGCAGGTGCCAAAAGTGTTTCCTC
TTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (130-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	51.795	100	0.523
comFC/cflB	Streptococcus pneumoniae TIGR4	38.021	99.482	0.378
comFC/cflB	Streptococcus pneumoniae Rx1	38.021	99.482	0.378
comFC/cflB	Streptococcus pneumoniae D39	38.021	99.482	0.378
comFC/cflB	Streptococcus pneumoniae R6	38.021	99.482	0.378
comFC/cflB	Streptococcus mitis NCTC 12261	37.5	99.482	0.373
comFC/cflB	Streptococcus mitis SK321	36.979	99.482	0.368