Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C5695_RS17780 Genome accession   NZ_CP027116
Coordinates   3415953..3416642 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain 145     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3410953..3421642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS17745 (C5695_17810) - 3411047..3411529 (-) 483 WP_117732074.1 flagellar protein FlgN -
  C5695_RS17750 (C5695_17815) flgM 3411548..3411811 (-) 264 WP_117732076.1 flagellar biosynthesis anti-sigma factor FlgM -
  C5695_RS17755 (C5695_17820) - 3411891..3412310 (-) 420 WP_117732078.1 TIGR03826 family flagellar region protein -
  C5695_RS20705 (C5695_17825) comFC 3412367..3412948 (-) 582 WP_336470382.1 ComF family protein Machinery gene
  C5695_RS17765 (C5695_17830) - 3413050..3413343 (-) 294 WP_117732082.1 late competence development ComFB family protein -
  C5695_RS17770 (C5695_17835) comFA 3413393..3414772 (-) 1380 WP_272866845.1 DEAD/DEAH box helicase Machinery gene
  C5695_RS17775 (C5695_17840) - 3414893..3415735 (-) 843 WP_117732084.1 DegV family protein -
  C5695_RS17780 (C5695_17845) degU 3415953..3416642 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  C5695_RS17785 (C5695_17850) degS 3416707..3417882 (-) 1176 WP_117732086.1 sensor histidine kinase Regulator
  C5695_RS17790 (C5695_17855) - 3418104..3418772 (+) 669 WP_117732088.1 YigZ family protein -
  C5695_RS17795 (C5695_17860) - 3418757..3419857 (+) 1101 WP_117732090.1 LCP family protein -
  C5695_RS17800 (C5695_17865) - 3419894..3420961 (-) 1068 WP_117732092.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=275077 C5695_RS17780 WP_008348273.1 3415953..3416642(-) (degU) [Bacillus pumilus strain 145]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=275077 C5695_RS17780 WP_008348273.1 3415953..3416642(-) (degU) [Bacillus pumilus strain 145]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAGCACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAGCAGTTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTGAAAACAGGTGCAAGAGGTTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTGACTCATA
ACTTAGTAAATGAATTCAGACGCCTAGCGACTAGTGGTGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAGTGTGAAGTACTGCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAATGACCGTA
CACAAGCTGTTGTTGTAGCGATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment