Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C5695_RS17770 Genome accession   NZ_CP027116
Coordinates   3413393..3414772 (-) Length   459 a.a.
NCBI ID   WP_272866845.1    Uniprot ID   -
Organism   Bacillus pumilus strain 145     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3408393..3419772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS17735 (C5695_17800) flgL 3408590..3409501 (-) 912 WP_117732070.1 flagellar hook-associated protein FlgL -
  C5695_RS17740 (C5695_17805) flgK 3409511..3411031 (-) 1521 WP_117732072.1 flagellar hook-associated protein FlgK -
  C5695_RS17745 (C5695_17810) - 3411047..3411529 (-) 483 WP_117732074.1 flagellar protein FlgN -
  C5695_RS17750 (C5695_17815) flgM 3411548..3411811 (-) 264 WP_117732076.1 flagellar biosynthesis anti-sigma factor FlgM -
  C5695_RS17755 (C5695_17820) - 3411891..3412310 (-) 420 WP_117732078.1 TIGR03826 family flagellar region protein -
  C5695_RS20705 (C5695_17825) comFC 3412367..3412948 (-) 582 WP_336470382.1 ComF family protein Machinery gene
  C5695_RS17765 (C5695_17830) - 3413050..3413343 (-) 294 WP_117732082.1 late competence development ComFB family protein -
  C5695_RS17770 (C5695_17835) comFA 3413393..3414772 (-) 1380 WP_272866845.1 DEAD/DEAH box helicase Machinery gene
  C5695_RS17775 (C5695_17840) - 3414893..3415735 (-) 843 WP_117732084.1 DegV family protein -
  C5695_RS17780 (C5695_17845) degU 3415953..3416642 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  C5695_RS17785 (C5695_17850) degS 3416707..3417882 (-) 1176 WP_117732086.1 sensor histidine kinase Regulator
  C5695_RS17790 (C5695_17855) - 3418104..3418772 (+) 669 WP_117732088.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52483.29 Da        Isoelectric Point: 10.0290

>NTDB_id=275076 C5695_RS17770 WP_272866845.1 3413393..3414772(-) (comFA) [Bacillus pumilus strain 145]
MNMDKAMELGRQLQSRQLLTVETRCSQSDLEWLEENGFVIRTPAIERTANGLTCGRCGVSHKRYFAFSPCDVCQKDCVYC
RSCIMMGKSTECGFLYEWTGPQMKETCHTKLTWYGDLSKGQKRASDKMIEAIKNKYDLLIWAVCGAGKTEVLFHGIEFAL
HQGMNVCIATPRTDVVLELEPRLKKAFKELNIAVLYGGSPQRFQIAPLVIATTHQLLRYKNAFDLLIIDEVDAFPYSIDE
RLHFAVIKAMRKKGMTVYLSATPSKKMRKDVSRGQLEATKIPQRFHQKPLPIPSFQWIGQWKKKLKKNRLPAKVLTWMQK
HITKKRRILLFVPSISIMKKVTKILREHRLNVEGVSADDQDRKQKVQHFRDDAYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNDSAEKECGLN

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=275076 C5695_RS17770 WP_272866845.1 3413393..3414772(-) (comFA) [Bacillus pumilus strain 145]
TTGAACATGGACAAAGCAATGGAATTAGGACGGCAGCTGCAATCACGACAACTTCTTACCGTTGAAACAAGGTGTTCACA
GTCCGATTTGGAATGGCTGGAGGAGAACGGTTTCGTCATTCGAACACCTGCCATTGAGAGAACAGCAAATGGTCTTACTT
GTGGCAGGTGTGGTGTCTCTCACAAGCGGTACTTTGCTTTCTCCCCGTGTGACGTATGTCAAAAAGATTGTGTGTACTGT
AGATCATGTATCATGATGGGGAAATCAACGGAATGTGGATTCCTTTATGAATGGACGGGCCCACAAATGAAAGAAACATG
TCACACCAAATTAACATGGTATGGAGACCTGTCTAAAGGTCAAAAAAGAGCATCAGATAAAATGATCGAAGCGATAAAAA
ACAAATATGATCTACTCATCTGGGCGGTTTGCGGAGCAGGGAAAACAGAGGTACTCTTTCATGGAATTGAATTTGCTTTG
CATCAAGGAATGAACGTCTGTATTGCGACACCTAGGACAGATGTTGTTCTTGAACTAGAGCCGCGGCTTAAAAAAGCATT
TAAAGAATTGAATATAGCTGTCCTTTATGGAGGAAGTCCTCAAAGATTCCAAATCGCACCGCTAGTGATCGCTACAACTC
ACCAGTTGCTGAGATACAAAAATGCATTTGATTTGCTCATTATAGATGAAGTTGATGCCTTTCCTTATTCAATCGATGAA
CGTCTTCATTTTGCTGTGATAAAAGCAATGAGAAAGAAAGGGATGACGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GAGAAAAGATGTATCTCGAGGACAACTGGAAGCGACAAAAATCCCTCAACGTTTTCACCAGAAACCCTTACCTATCCCGT
CCTTTCAATGGATTGGACAATGGAAAAAGAAATTAAAGAAGAACCGGCTCCCAGCTAAAGTCCTGACTTGGATGCAGAAG
CATATCACAAAGAAGAGAAGGATTTTACTTTTTGTTCCTTCTATTTCTATCATGAAGAAGGTAACGAAGATTCTTAGAGA
ACACCGACTAAATGTAGAGGGGGTGTCTGCTGATGATCAAGATAGGAAACAAAAGGTCCAGCACTTCAGAGATGACGCTT
ATGATGTATTAGTTACTACCACAATTCTAGAAAGAGGCGTCACTATTCCTAACGTTCAAGTAGGGGTGCTAGGTGCGGAA
TCTACTATCTTTACAGAGAGTGCACTTGTCCAGATTTCTGGTAGAGCAGGAAGACATCCGGATTTTTTTAATGGGGATGT
GTACTTTTTTCATTTTGGCTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATTGTAAAAATGAATGATTCGGCTGAAA
AAGAGTGTGGGCTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(117-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.07

99.346

0.527
  comFA Latilactobacillus sakei subsp. sakei 23K

36.784

98.911

0.364

Multiple sequence alignment