Detailed information NTG0274678

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: C5Y82_RS19290
• Genome accession: NZ_CP027034
• Coordinates: 3194363..3195049 (-)
• Length: 228 a.a.
• NCBI ID: WP_012011430.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain 150a
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3189363..3200049

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5Y82_RS16400 (C5Y82_16400)	fliW	3189496..3189930 (-)	435	WP_088004420.1	flagellar assembly protein FliW	-
C5Y82_RS16405 (C5Y82_16405)	-	3189959..3190537 (-)	579	WP_012011425.1	DUF6470 family protein	-
C5Y82_RS16410 (C5Y82_16410)	flgL	3190586..3191497 (-)	912	WP_119125449.1	flagellar hook-associated protein FlgL	-
C5Y82_RS16415 (C5Y82_16415)	flgK	3191507..3193027 (-)	1521	WP_012011427.1	flagellar hook-associated protein FlgK	-
C5Y82_RS16420 (C5Y82_16420)	-	3193043..3193525 (-)	483	WP_012011428.1	flagellar protein FlgN	-
C5Y82_RS16425 (C5Y82_16425)	flgM	3193544..3193807 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
C5Y82_RS16430 (C5Y82_16430)	-	3193887..3194306 (-)	420	WP_012011429.1	TIGR03826 family flagellar region protein	-
C5Y82_RS19290	comFC	3194363..3195049 (-)	687	WP_012011430.1	amidophosphoribosyltransferase	Machinery gene
C5Y82_RS16440 (C5Y82_16440)	-	3195046..3195339 (-)	294	WP_012011431.1	competence protein ComFB	-
C5Y82_RS16445 (C5Y82_16445)	comFA	3195406..3196785 (-)	1380	WP_012011432.1	DEAD/DEAH box helicase	Machinery gene
C5Y82_RS16450 (C5Y82_16450)	-	3196905..3197747 (-)	843	WP_012011433.1	DegV family protein	-
C5Y82_RS16455 (C5Y82_16455)	degU	3197965..3198654 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
C5Y82_RS16460 (C5Y82_16460)	degS	3198719..3199894 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26071.53 Da
• Isoelectric Point: 9.9190

>NTDB_id=274678 C5Y82_RS19290 WP_012011430.1 3194363..3195049(-) (comFC) [Bacillus pumilus strain 150a]
MICLICEGHVVTPFTWKSLLLLNDDRLCIACKHHLEKIKRPICPACGRAQSNDQLCQDCSWWKERPDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDAQAVFKRSFSMKEPVLIPIPLSKERQKERGFNQSVILASLIGQPILQPLMKIH
QSKQSKKKKNERLDQKGMFQIKQTDAIIQRDIILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=274678 C5Y82_RS19290 WP_012011430.1 3194363..3195049(-) (comFC) [Bacillus pumilus strain 150a]
TTGATCTGCCTGATTTGTGAGGGACATGTTGTCACTCCTTTTACATGGAAATCATTACTTCTATTAAATGATGATCGTCT
ATGTATAGCATGTAAGCATCACTTAGAAAAAATTAAACGTCCGATTTGTCCAGCTTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCTGGTGGAAAGAACGCCCTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTCCGAGGTGATACAGCTTTAGCTGAGCTTTTTAAACAAGA
TGCCCAAGCAGTATTTAAGCGCTCCTTTTCAATGAAAGAACCTGTGCTCATCCCAATTCCTTTAAGTAAAGAAAGACAAA
AGGAAAGAGGGTTTAATCAGTCCGTCATACTTGCTTCCTTGATTGGTCAGCCGATCCTTCAGCCGCTTATGAAAATACAC
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAAGCAGACAGATGCGAT
CATTCAAAGGGATATTATCTTGATTGACGACATTTATACAACGGGGGCTACTATTTATGATGCTGCGAGAATTTTAAAAG
AAGCGGGTGCCAAAAGTGTTTCCTCTTTTACGTTAATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (163-226)

• Double zinc ribbon domain (DZR_2) (3-59)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.435	100	0.509
comFC/cflB	Streptococcus pneumoniae Rx1	40.611	100	0.408
comFC/cflB	Streptococcus pneumoniae D39	40.611	100	0.408
comFC/cflB	Streptococcus pneumoniae R6	40.611	100	0.408
comFC/cflB	Streptococcus pneumoniae TIGR4	40.611	100	0.408
comFC/cflB	Streptococcus mitis SK321	39.301	100	0.395
comFC/cflB	Streptococcus mitis NCTC 12261	39.301	100	0.395