Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C5Y82_RS16445 Genome accession   NZ_CP027034
Coordinates   3195406..3196785 (-) Length   459 a.a.
NCBI ID   WP_012011432.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3190406..3201785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS16410 (C5Y82_16410) flgL 3190586..3191497 (-) 912 WP_119125449.1 flagellar hook-associated protein FlgL -
  C5Y82_RS16415 (C5Y82_16415) flgK 3191507..3193027 (-) 1521 WP_012011427.1 flagellar hook-associated protein FlgK -
  C5Y82_RS16420 (C5Y82_16420) - 3193043..3193525 (-) 483 WP_012011428.1 flagellar protein FlgN -
  C5Y82_RS16425 (C5Y82_16425) flgM 3193544..3193807 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  C5Y82_RS16430 (C5Y82_16430) - 3193887..3194306 (-) 420 WP_012011429.1 TIGR03826 family flagellar region protein -
  C5Y82_RS19290 comFC 3194363..3195049 (-) 687 WP_012011430.1 amidophosphoribosyltransferase Machinery gene
  C5Y82_RS16440 (C5Y82_16440) - 3195046..3195339 (-) 294 WP_012011431.1 competence protein ComFB -
  C5Y82_RS16445 (C5Y82_16445) comFA 3195406..3196785 (-) 1380 WP_012011432.1 DEAD/DEAH box helicase Machinery gene
  C5Y82_RS16450 (C5Y82_16450) - 3196905..3197747 (-) 843 WP_012011433.1 DegV family protein -
  C5Y82_RS16455 (C5Y82_16455) degU 3197965..3198654 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  C5Y82_RS16460 (C5Y82_16460) degS 3198719..3199894 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  C5Y82_RS16465 (C5Y82_16465) - 3200116..3200784 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52483.46 Da        Isoelectric Point: 10.1655

>NTDB_id=274670 C5Y82_RS16445 WP_012011432.1 3195406..3196785(-) (comFA) [Bacillus pumilus strain 150a]
MNMDKAMKLGEQLQSRHLLTAETRCLQSELDWLEEKGLVIRRTAIERKANGLICCRCGVSKNQYFAHSPCDKCQKDCVYC
RSCIMMGKTSECEFLYEWTGPPIEGTAHTELTWRGNLSKGQKRASEKLIEAIKHKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMRVCIATPRTDVVLELEPRLKKAFHGLKIAALYGGSLQRFQIAPLVIATTHQLMRYKHAFDVLVIDEVDAFPYSMDE
RLHFAVLKAMRKKGVRVYLSATPSKKMIRDVSRGQLEAIKIPLRFHQQLLPVPSFQWIGHWKKKLKKNQLPPIVMNWMQN
HIAKKRRVLLFVPSISTMKKVTKVLRKHHLNVEGVSADDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRSMKQAKNHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=274670 C5Y82_RS16445 WP_012011432.1 3195406..3196785(-) (comFA) [Bacillus pumilus strain 150a]
TTGAACATGGACAAAGCAATGAAACTCGGGGAGCAACTGCAGTCACGCCACCTGCTTACCGCTGAAACAAGATGCTTACA
GTCTGAGTTAGATTGGCTGGAGGAGAAAGGGTTAGTTATCCGAAGGACTGCTATTGAGAGGAAAGCAAATGGTCTTATTT
GTTGCAGATGTGGTGTTTCAAAAAATCAATACTTTGCCCACTCTCCATGTGACAAGTGTCAAAAAGATTGTGTGTACTGT
AGATCATGCATCATGATGGGGAAAACATCGGAATGTGAATTTCTATATGAATGGACGGGTCCACCCATAGAAGGAACCGC
TCACACGGAATTAACATGGCGGGGAAACCTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCGAAGCGATAAAAC
ACAAATCTGATTTACTTATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAAGTTCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGGGTATGCATTGCGACACCTAGAACTGATGTGGTCCTTGAACTAGAGCCTCGGCTTAAAAAAGCATT
TCACGGACTGAAAATAGCTGCTCTTTATGGAGGAAGTCTTCAAAGGTTCCAAATAGCACCGCTAGTAATCGCTACAACTC
ATCAGTTGATGAGATATAAACATGCATTTGATGTGCTCGTTATAGATGAAGTTGATGCCTTTCCTTATTCAATGGATGAA
CGACTCCACTTTGCTGTTTTAAAGGCAATGAGAAAAAAAGGTGTTAGGGTTTATTTAAGTGCGACGCCATCTAAGAAAAT
GATAAGAGATGTATCTCGTGGACAACTAGAAGCCATAAAAATTCCTCTTCGCTTTCACCAACAACTTTTACCTGTCCCAT
CCTTTCAATGGATTGGACACTGGAAGAAGAAATTAAAAAAGAACCAGCTTCCACCTATAGTAATGAATTGGATGCAGAAC
CATATTGCAAAGAAGAGAAGGGTTTTACTTTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
ACACCACTTAAATGTAGAAGGGGTGTCTGCTGATGATCCAGATAGGAAACAAAAGGTCCAGCAATTCAGAGATGACAAAT
ACGATGTATTAGTTACAACCACAATTCTTGAAAGAGGCGTAACCATTCCAAATGTGCAAGTGGGGGTGCTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCCGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAATCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCAGAAAAATAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(322-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.967

99.129

0.525

Multiple sequence alignment