Detailed information NTG0274672

Bioinformatically predicted

Overview

• Name: degS
• Type: Regulator
• Locus tag: C5Y82_RS16460
• Genome accession: NZ_CP027034
• Coordinates: 3198719..3199894 (-)
• Length: 391 a.a.
• NCBI ID: WP_003213166.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain 150a
• Function: phosphorylation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3193719..3204894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5Y82_RS16430 (C5Y82_16430)	-	3193887..3194306 (-)	420	WP_012011429.1	TIGR03826 family flagellar region protein	-
C5Y82_RS19290	comFC	3194363..3195049 (-)	687	WP_012011430.1	amidophosphoribosyltransferase	Machinery gene
C5Y82_RS16440 (C5Y82_16440)	-	3195046..3195339 (-)	294	WP_012011431.1	competence protein ComFB	-
C5Y82_RS16445 (C5Y82_16445)	comFA	3195406..3196785 (-)	1380	WP_012011432.1	DEAD/DEAH box helicase	Machinery gene
C5Y82_RS16450 (C5Y82_16450)	-	3196905..3197747 (-)	843	WP_012011433.1	DegV family protein	-
C5Y82_RS16455 (C5Y82_16455)	degU	3197965..3198654 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
C5Y82_RS16460 (C5Y82_16460)	degS	3198719..3199894 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
C5Y82_RS16465 (C5Y82_16465)	-	3200116..3200784 (+)	669	WP_012011434.1	YigZ family protein	-
C5Y82_RS16470 (C5Y82_16470)	-	3200769..3201860 (+)	1092	WP_119125450.1	LCP family protein	-
C5Y82_RS16475 (C5Y82_16475)	-	3201896..3202963 (-)	1068	WP_003212692.1	MraY family glycosyltransferase	-
C5Y82_RS16480 (C5Y82_16480)	-	3203094..3204293 (-)	1200	WP_012011436.1	glycosyltransferase	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 45523.25 Da
• Isoelectric Point: 5.8757

>NTDB_id=274672 C5Y82_RS16460 WP_003213166.1 3198719..3199894(-) (degS) [Bacillus pumilus strain 150a]
MTTPKMDPKLLDSIIMKMLSTVDGSKDEVFRIGEQSRQQYESLVEELKQIKQQVNEVIDFGDKLEVHTRHARNRLSEVSR
NFNKFSEEEIREAYEKAHNLQVELTMIQQREKQLRERRDDLERRLLSLQDVIERSETLVSQITVVLNYLNQDLRQVGVLL
EDAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEEGFKEIRSLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLNTIEEYDGKTKITFQCLGDTESERIASQFEVALFRLAQEAVTNSLKHSEAEEISVKVEV
TKDFVTLIIKDDGKGFDMKDVKTNKNKSFGLLGMKERVDLLEGKMTIDSKIGLGTFIMIRVPLTLQNKIVK

Nucleotide

• Length: 1176 bp

>NTDB_id=274672 C5Y82_RS16460 WP_003213166.1 3198719..3199894(-) (degS) [Bacillus pumilus strain 150a]
ATGACAACACCTAAAATGGATCCGAAATTATTGGATTCAATCATCATGAAAATGCTAAGTACAGTTGATGGCAGCAAGGA
CGAAGTATTTAGGATAGGCGAACAGTCCCGTCAACAATATGAAAGCCTTGTAGAAGAGCTGAAGCAAATCAAGCAGCAAG
TAAACGAAGTAATTGATTTTGGGGATAAACTAGAAGTCCATACGAGACATGCTAGAAATCGCTTATCTGAGGTCAGCAGA
AACTTCAACAAATTTAGCGAAGAAGAAATACGCGAGGCCTACGAAAAAGCACATAATCTGCAAGTGGAACTCACCATGAT
CCAGCAGCGCGAAAAGCAGCTGAGAGAAAGAAGAGATGATCTAGAAAGACGATTGTTAAGCCTACAAGACGTCATTGAAC
GCTCTGAAACGCTTGTGAGCCAGATCACAGTTGTTCTTAACTATCTCAATCAGGACTTACGCCAAGTTGGCGTGTTACTT
GAAGATGCTCAAGCAAAACAAGATTTTGGACTGAGAATTATTGAAGCCCAAGAAGAAGAACGTAAAAGGGTATCCCGTGA
AATTCATGATGGTCCGGCCCAAATGCTGGCAAACGTGATGATGCGTTCCGAATTAATTGAACGGATTTTTAGAGACCGTG
GAACAGAAGAAGGCTTTAAAGAAATTAGAAGTCTCAGACAGAATGTGCGAAATGCTCTGTACGAAGTGAGAAGAATCATT
TATGATTTAAGACCAATGGCTTTAGATGATTTGGGTCTCATTCCGACGCTAAGAAAATATTTAAACACAATCGAAGAGTA
TGATGGAAAAACCAAGATTACGTTCCAATGCCTAGGAGATACAGAAAGCGAAAGAATTGCTTCTCAATTTGAAGTGGCAC
TGTTTAGACTAGCCCAAGAAGCTGTCACAAATTCACTAAAGCATTCCGAAGCTGAAGAAATCTCTGTGAAAGTAGAAGTG
ACGAAAGACTTTGTCACGTTAATTATCAAAGATGATGGAAAAGGTTTTGATATGAAAGATGTGAAAACAAATAAAAATAA
ATCCTTCGGTTTACTTGGCATGAAAGAACGCGTAGACTTACTGGAAGGTAAAATGACCATTGACTCAAAAATAGGTCTAG
GGACATTCATCATGATTCGCGTGCCATTAACATTGCAAAATAAAATTGTAAAATAG

Domains

Predicted by InterproScan.

• Sensor protein DegS (DegS) (12-170)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (291-384)

• Histidine kinase (HisKA_3) (180-248)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
degS	Bacillus subtilis subsp. subtilis str. 168	85.455	98.465	0.841