Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C5Y82_RS16455 Genome accession   NZ_CP027034
Coordinates   3197965..3198654 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain 150a     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3192965..3203654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS16420 (C5Y82_16420) - 3193043..3193525 (-) 483 WP_012011428.1 flagellar protein FlgN -
  C5Y82_RS16425 (C5Y82_16425) flgM 3193544..3193807 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  C5Y82_RS16430 (C5Y82_16430) - 3193887..3194306 (-) 420 WP_012011429.1 TIGR03826 family flagellar region protein -
  C5Y82_RS19290 comFC 3194363..3195049 (-) 687 WP_012011430.1 amidophosphoribosyltransferase Machinery gene
  C5Y82_RS16440 (C5Y82_16440) - 3195046..3195339 (-) 294 WP_012011431.1 competence protein ComFB -
  C5Y82_RS16445 (C5Y82_16445) comFA 3195406..3196785 (-) 1380 WP_012011432.1 DEAD/DEAH box helicase Machinery gene
  C5Y82_RS16450 (C5Y82_16450) - 3196905..3197747 (-) 843 WP_012011433.1 DegV family protein -
  C5Y82_RS16455 (C5Y82_16455) degU 3197965..3198654 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  C5Y82_RS16460 (C5Y82_16460) degS 3198719..3199894 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  C5Y82_RS16465 (C5Y82_16465) - 3200116..3200784 (+) 669 WP_012011434.1 YigZ family protein -
  C5Y82_RS16470 (C5Y82_16470) - 3200769..3201860 (+) 1092 WP_119125450.1 LCP family protein -
  C5Y82_RS16475 (C5Y82_16475) - 3201896..3202963 (-) 1068 WP_003212692.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=274671 C5Y82_RS16455 WP_008348273.1 3197965..3198654(-) (degU) [Bacillus pumilus strain 150a]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=274671 C5Y82_RS16455 WP_008348273.1 3197965..3198654(-) (degU) [Bacillus pumilus strain 150a]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCAGATGTTGTCA
TTATGGACATTAATATGCCGAATGTTAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGACGAAAACTATGTGACACATGCATTGAAAACAGGAGCAAGAGGCTATCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCGCAGCATGAAGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAGACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment