Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C5F71_RS07990 Genome accession   NZ_CP026881
Coordinates   1675658..1676878 (+) Length   406 a.a.
NCBI ID   WP_104910929.1    Uniprot ID   -
Organism   Pseudomonas sp. LG1D9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1670658..1681878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5F71_RS07965 nadC 1672052..1672900 (+) 849 WP_104910927.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C5F71_RS07970 - 1673006..1673311 (-) 306 WP_070994130.1 DUF6388 family protein -
  C5F71_RS07980 - 1673560..1674966 (-) 1407 WP_104910928.1 O-antigen ligase -
  C5F71_RS07985 - 1675044..1675454 (-) 411 WP_029291989.1 pilin -
  C5F71_RS07990 pilC 1675658..1676878 (+) 1221 WP_104910929.1 type II secretion system F family protein Machinery gene
  C5F71_RS07995 pilD 1676881..1677753 (+) 873 WP_133714623.1 A24 family peptidase Machinery gene
  C5F71_RS08000 coaE 1677750..1678373 (+) 624 WP_029291995.1 dephospho-CoA kinase -
  C5F71_RS08005 yacG 1678370..1678573 (+) 204 WP_092238375.1 DNA gyrase inhibitor YacG -
  C5F71_RS08010 - 1678570..1678785 (-) 216 WP_029292000.1 hypothetical protein -
  C5F71_RS08015 - 1678849..1679538 (-) 690 WP_029292001.1 energy-coupling factor ABC transporter permease -
  C5F71_RS08020 - 1679535..1680026 (-) 492 WP_169390310.1 FAD/FMN-containing dehydrogenase -
  C5F71_RS08025 - 1680105..1680734 (+) 630 WP_029292005.1 DUF1780 domain-containing protein -
  C5F71_RS08030 - 1680774..1680947 (+) 174 WP_104910930.1 DUF3094 family protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43826.53 Da        Isoelectric Point: 9.8859

>NTDB_id=273055 C5F71_RS07990 WP_104910929.1 1675658..1676878(+) (pilC) [Pseudomonas sp. LG1D9]
MNDVTVSPSATYAWEGTLRNGRKVSGETRGHSPAVIKAQLRRQGITPVRVHVRSSLLCGLGTPITPADIALFTRQLATLL
KAGIPLLQAFDMIGEGFDSPAMRTMVQGLKQEIAAGNSLTAALSKQPQCFNPLYCSLIAAGEQAGTLETLLERVATHLEK
SQRLKARIKKAMTYPLVVVLVAMLVSSILLIHVVPQFESLFAGIDTPLPRFTLLVIGLSEFMQGAWWMLLLTAIASAWGI
RRAYRRHNGLRLWLDTGLLKLPLAGTLLKKTAVARYARTLATTFAAGVPLAQALDSVAAAAGNERFTQAITRMRQDVAIG
MQLNRTMTASGLFPGMAIQMTAIGEESGALDSMLEKVADHYETDVDNLVDNLSSLMEPLIMVVLGSIVGALVIAMYLPIF
QLGTAF

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=273055 C5F71_RS07990 WP_104910929.1 1675658..1676878(+) (pilC) [Pseudomonas sp. LG1D9]
ATGAATGATGTCACTGTGAGCCCCTCCGCCACCTATGCTTGGGAAGGCACGTTGCGCAATGGCCGCAAGGTGTCCGGCGA
AACCCGTGGCCATAGCCCGGCCGTGATCAAGGCACAACTGCGCCGGCAAGGCATAACCCCGGTTCGGGTACACGTGCGCT
CCAGCCTCCTTTGCGGCCTGGGCACCCCAATCACCCCAGCCGATATTGCGCTGTTCACCCGCCAACTGGCGACCCTGCTG
AAGGCGGGAATTCCCTTGCTACAAGCCTTCGACATGATTGGCGAAGGCTTTGACAGCCCGGCCATGCGCACAATGGTCCA
AGGGCTGAAGCAGGAGATTGCCGCCGGCAACAGCCTGACCGCCGCGCTATCGAAACAGCCGCAGTGCTTCAACCCCCTGT
ATTGCAGCCTGATCGCGGCCGGCGAACAGGCCGGCACCCTGGAGACCTTGCTGGAGCGGGTAGCCACCCACCTGGAGAAG
AGCCAGCGCCTCAAGGCCCGGATCAAGAAGGCCATGACCTATCCGCTGGTGGTCGTGCTCGTGGCGATGCTGGTCAGCAG
CATCTTGCTGATCCACGTCGTGCCCCAATTCGAAAGCCTGTTCGCCGGCATCGACACACCGCTGCCACGCTTTACCCTGC
TGGTCATCGGGCTGTCCGAATTCATGCAAGGCGCATGGTGGATGCTATTGCTGACCGCAATCGCAAGTGCCTGGGGAATA
CGCCGCGCCTACCGCCGACACAACGGTTTGCGCCTGTGGCTGGACACTGGTTTGTTGAAACTGCCGCTGGCAGGCACACT
GCTGAAAAAAACCGCAGTCGCCCGCTACGCTCGCACACTCGCCACCACCTTTGCCGCTGGCGTACCGCTGGCACAGGCGC
TGGACTCAGTGGCCGCAGCCGCTGGCAACGAGCGGTTCACACAGGCAATCACGCGTATGCGCCAGGACGTGGCAATAGGA
ATGCAATTGAATCGAACCATGACCGCCAGCGGCCTGTTCCCTGGCATGGCGATCCAGATGACCGCCATCGGCGAAGAATC
GGGAGCGCTGGACAGCATGCTGGAGAAGGTCGCCGATCATTATGAAACGGACGTCGACAACCTGGTGGACAACCTCAGCA
GCCTGATGGAGCCGCTGATCATGGTGGTGCTCGGCAGCATTGTCGGGGCACTGGTAATCGCCATGTACCTGCCGATCTTC
CAGCTTGGCACGGCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(277-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.081

97.537

0.567
  pilC Acinetobacter baylyi ADP1

52.141

97.783

0.51
  pilC Acinetobacter baumannii D1279779

51.01

97.537

0.498
  pilC Legionella pneumophila strain ERS1305867

46.814

100

0.47
  pilC Vibrio cholerae strain A1552

40.955

98.03

0.401
  pilG Neisseria gonorrhoeae MS11

39.747

97.291

0.387
  pilG Neisseria meningitidis 44/76-A

40.26

94.828

0.382
  pilC Vibrio campbellii strain DS40M4

38.75

98.522

0.382

Multiple sequence alignment