Detailed information NTG0273056

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C5F71_RS07995
• Genome accession: NZ_CP026881
• Coordinates: 1676881..1677753 (+)
• Length: 290 a.a.
• NCBI ID: WP_133714623.1
• Uniprot ID: -
• Organism: Pseudomonas sp. LG1D9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1671881..1682753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C5F71_RS07965	nadC	1672052..1672900 (+)	849	WP_104910927.1	carboxylating nicotinate-nucleotide diphosphorylase	-
C5F71_RS07970	-	1673006..1673311 (-)	306	WP_070994130.1	DUF6388 family protein	-
C5F71_RS07980	-	1673560..1674966 (-)	1407	WP_104910928.1	O-antigen ligase	-
C5F71_RS07985	-	1675044..1675454 (-)	411	WP_029291989.1	pilin	-
C5F71_RS07990	pilC	1675658..1676878 (+)	1221	WP_104910929.1	type II secretion system F family protein	Machinery gene
C5F71_RS07995	pilD	1676881..1677753 (+)	873	WP_133714623.1	A24 family peptidase	Machinery gene
C5F71_RS08000	coaE	1677750..1678373 (+)	624	WP_029291995.1	dephospho-CoA kinase	-
C5F71_RS08005	yacG	1678370..1678573 (+)	204	WP_092238375.1	DNA gyrase inhibitor YacG	-
C5F71_RS08010	-	1678570..1678785 (-)	216	WP_029292000.1	hypothetical protein	-
C5F71_RS08015	-	1678849..1679538 (-)	690	WP_029292001.1	energy-coupling factor ABC transporter permease	-
C5F71_RS08020	-	1679535..1680026 (-)	492	WP_169390310.1	FAD/FMN-containing dehydrogenase	-
C5F71_RS08025	-	1680105..1680734 (+)	630	WP_029292005.1	DUF1780 domain-containing protein	-
C5F71_RS08030	-	1680774..1680947 (+)	174	WP_104910930.1	DUF3094 family protein	-
C5F71_RS08035	-	1681008..1682306 (+)	1299	WP_029292008.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32025.15 Da
• Isoelectric Point: 7.3429

>NTDB_id=273056 C5F71_RS07995 WP_133714623.1 1676881..1677753(+) (pilD) [Pseudomonas sp. LG1D9]
MTLDQLLILHPWLFVWAALVLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPGGPTYNLLRPNSCCPHCSAPIR
PWENIPVISYLLLRGHCARCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNYFELYVTLPDAVLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVG
AIAGVIVLRMRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFK

Nucleotide

• Length: 873 bp

>NTDB_id=273056 C5F71_RS07995 WP_133714623.1 1676881..1677753(+) (pilD) [Pseudomonas sp. LG1D9]
ATGACCCTGGACCAACTCCTGATCCTCCATCCCTGGTTGTTCGTCTGGGCAGCACTGGTGCTCGGGCTGATCGTCGGCAG
CTTCCTCAACGTGCTGGTCTGGCGCCTGCCAAAAATGCTCGAACGGGACTGGCGCGCCCAGGCCCATGAGATACTCGGCC
TGCCTCCGGAGCCCGGTGGCCCGACCTATAACCTGTTGCGCCCCAACTCCTGTTGCCCGCATTGTTCGGCGCCGATTCGC
CCATGGGAAAATATCCCGGTGATCAGTTATCTGCTGCTCAGGGGGCACTGCGCGCGATGCCACGGCTCCATCAGCCCGCG
CTACCCGCTCACCGAACTGGCCTGCGGGCTGCTCTCGGCATTTATCGCCTGGCACTACGGCTTCGGCTGGCCGGCCGCTG
GAGTGCTGTTCTTGAGCTGGGGCTTGCTGGCCATGAGCCTGATTGATGCCGACCACCAGCTATTACCGGATGTGCTGGTG
CTGCCACTGCTGTGGCTGGGGCTGATCCTCAATTACTTCGAGCTGTATGTAACGCTGCCCGATGCAGTGCTGGGCGCGGT
TGCCGGGTACCTGAGCCTGTGGTCGGTGTTCTGGCTATTCAAGCTGTGCACTGGCAAGGACGGCATGGGCTATGGCGACT
TCAAGCTGCTAGCCCTGCTCGGCGCCTGGGGTGGCTGGCAGATCCTGCCGCTGACGCTGTTGCTGGCGTCGCTGGTGGGT
GCGATCGCAGGGGTGATTGTGTTGCGCATGCGTAACGCGCAGACCTCGGTGCCCCTGCCTTTTGGTCCCTATCTGGCGAT
CGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.545	98.621	0.538
pilD	Vibrio campbellii strain DS40M4	52.5	96.552	0.507
pilD	Neisseria gonorrhoeae MS11	51.111	93.103	0.476
pilD	Acinetobacter baumannii D1279779	49.819	95.517	0.476
pilD	Acinetobacter nosocomialis M2	49.097	95.517	0.469