Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C2I25_RS20630 Genome accession   NZ_CP026678
Coordinates   3866814..3868052 (+) Length   412 a.a.
NCBI ID   WP_106824295.1    Uniprot ID   -
Organism   Bacillus cereus strain TG1-6     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3861814..3873052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2I25_RS20600 (C2I25_20580) yfmH 3861869..3863155 (+) 1287 WP_106824291.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  C2I25_RS20605 (C2I25_20585) ymfI 3863256..3863969 (+) 714 WP_106824293.1 elongation factor P 5-aminopentanone reductase -
  C2I25_RS20610 (C2I25_20590) - 3864045..3864293 (+) 249 WP_000114444.1 DUF3243 domain-containing protein -
  C2I25_RS20615 (C2I25_20595) - 3864432..3865217 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  C2I25_RS20620 (C2I25_20600) - 3865239..3866150 (+) 912 WP_000137473.1 helix-turn-helix domain-containing protein -
  C2I25_RS20625 (C2I25_20605) pgsA 3866215..3866793 (+) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C2I25_RS20630 (C2I25_20610) cinA 3866814..3868052 (+) 1239 WP_106824295.1 competence/damage-inducible protein CinA Machinery gene
  C2I25_RS20635 (C2I25_20615) recA 3868197..3869228 (+) 1032 WP_001283854.1 recombinase RecA Machinery gene
  C2I25_RS20645 (C2I25_20625) rny 3869711..3871276 (+) 1566 WP_000099769.1 ribonuclease Y -
  C2I25_RS20650 (C2I25_20630) - 3871439..3872233 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  C2I25_RS20655 (C2I25_20635) spoVS 3872383..3872643 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45456.77 Da        Isoelectric Point: 5.5024

>NTDB_id=271680 C2I25_RS20630 WP_106824295.1 3866814..3868052(+) (cinA) [Bacillus cereus strain TG1-6]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALALISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVSEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGFICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDLLKADIGISFTGVAGPDASEQKEPGTVFVGLAIKGEQTAVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=271680 C2I25_RS20630 WP_106824295.1 3866814..3868052(+) (cinA) [Bacillus cereus strain TG1-6]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTATTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTCACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGCCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCGGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCACGTGTGCTTCGTTTCTTCGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCGCTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGCGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAATGCTGGTG
TTTCTTCTGTATTTAAGGGCGGTTTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTA
TTGCATACTGATGGTGCAGTTAGTAAGGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATTTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAGCCAGGAACAGTATTTGTTGGATTAGCGA
TTAAAGGTGAACAAACTGCAGTCTTTCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGATCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.049

99.515

0.578
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus suis isolate S10

40.584

91.505

0.371

Multiple sequence alignment