Detailed information NTG0027106

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PING_RS02520
• Genome accession: NC_008709
• Coordinates: 609052..610284 (+)
• Length: 410 a.a.
• NCBI ID: WP_011768897.1
• Uniprot ID: A1SS73
• Organism: Psychromonas ingrahamii 37
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 604052..615284

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PING_RS02505 (Ping_0478)	-	605080..605484 (+)	405	WP_011768894.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
PING_RS02510 (Ping_0479)	-	606497..606886 (+)	390	WP_011768895.1	hypothetical protein	-
PING_RS02515 (Ping_0480)	pilB	606886..608574 (+)	1689	WP_011768896.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PING_RS02520 (Ping_0481)	pilC	609052..610284 (+)	1233	WP_011768897.1	type II secretion system F family protein	Machinery gene
PING_RS02525 (Ping_0483)	-	610888..612108 (-)	1221	WP_011768898.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 44819.09 Da
• Isoelectric Point: 9.9568

>NTDB_id=27106 PING_RS02520 WP_011768897.1 609052..610284(+) (pilC) [Psychromonas ingrahamii 37]
MAVKKKTKGPVIDTFKWKGLNRKGAAVSGEIQAESVAEVKIELRKQKINVTKIQKKSKPLFSFGNKIKPMDIAIISRQIA
TMLGAGVPLVQGLQLIAKSSEKPASRKLMSTISQEVATGTPLSQTLRGHSLYFDDLYCDLVYAGEQSGALDTIYDRISIY
KEKSEILKSKIKKAMFYPAAVLTVAGLVTLLLLLFVIPQFKDIFEGFGAELPAFTLFVLGISDFVQSYWYMIVGVVIVFL
YLFKKAYRRSQKVRDNTDRFVLKIPVISTILDKAAVARFARTLSTTFAAGIPLVDGLVSAAGASGNYIYRTAILNVRAEV
IAGMQMHIAMKTTTVFPDMITQMVMIGEEAGNLDGMLSKVADIYEQQVDDAVDSLTSLLEPMIMVVLGVVVGGLIVAMYL
PIFALGTVVG

Nucleotide

• Length: 1233 bp

>NTDB_id=27106 PING_RS02520 WP_011768897.1 609052..610284(+) (pilC) [Psychromonas ingrahamii 37]
ATGGCTGTAAAAAAGAAAACTAAAGGACCAGTCATTGATACTTTTAAATGGAAAGGCCTTAATCGTAAGGGCGCTGCAGT
ATCAGGCGAAATACAGGCTGAGAGTGTTGCAGAAGTTAAAATTGAACTGCGTAAGCAGAAGATTAATGTCACTAAAATAC
AGAAAAAATCCAAACCACTTTTCTCCTTCGGTAATAAAATAAAACCCATGGATATTGCGATTATTTCTCGCCAGATAGCC
ACTATGCTCGGAGCAGGTGTACCTTTAGTACAAGGTTTACAATTAATTGCCAAAAGCAGCGAAAAACCGGCATCGCGAAA
ATTAATGAGCACAATTTCTCAAGAGGTGGCAACGGGCACACCACTTTCACAAACCCTGCGTGGTCATTCCCTTTATTTTG
ATGATTTATACTGCGATCTTGTTTATGCCGGTGAGCAGTCTGGTGCATTAGATACAATTTACGACCGTATCTCTATTTAT
AAAGAAAAATCTGAAATTTTAAAATCAAAAATTAAAAAAGCGATGTTTTATCCAGCGGCGGTACTAACGGTTGCCGGCCT
GGTCACTCTGCTTTTACTGCTCTTTGTTATTCCGCAGTTTAAAGATATCTTTGAAGGTTTTGGCGCAGAGCTACCCGCTT
TTACGCTGTTTGTACTGGGCATTTCCGACTTTGTACAGTCTTACTGGTATATGATAGTCGGAGTGGTAATCGTTTTTCTC
TATCTGTTTAAAAAGGCGTATCGCCGCTCGCAGAAAGTGCGTGACAATACCGATAGATTTGTTCTTAAGATACCAGTGAT
CAGTACCATTTTAGATAAAGCGGCGGTGGCACGTTTTGCAAGAACCCTTTCTACTACCTTTGCTGCCGGTATTCCTTTGG
TTGACGGGCTAGTTTCCGCTGCGGGCGCTTCCGGAAATTATATTTATCGCACTGCGATTCTCAACGTGCGTGCGGAGGTA
ATTGCAGGCATGCAGATGCACATCGCCATGAAAACGACCACTGTTTTCCCCGATATGATAACCCAGATGGTGATGATCGG
TGAAGAGGCGGGTAATTTGGATGGTATGTTAAGCAAGGTTGCTGATATCTATGAACAGCAGGTTGATGATGCTGTTGATT
CCTTAACCAGCCTGTTGGAGCCGATGATCATGGTGGTTTTAGGGGTAGTGGTCGGCGGTTTGATTGTGGCTATGTATTTA
CCGATCTTCGCGTTAGGTACCGTTGTTGGTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (76-198)

• Type II secretion system (T2SS), protein F (T2SSF) (279-401)

3D structure

• AlphaFold DB: A1SS73

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	56.709	96.341	0.546
pilC	Legionella pneumophila strain ERS1305867	52.854	98.293	0.52
pilC	Acinetobacter baumannii D1279779	49.392	100	0.495
pilC	Acinetobacter baylyi ADP1	48.905	100	0.49
pilC	Vibrio cholerae strain A1552	46.437	99.268	0.461
pilC	Vibrio campbellii strain DS40M4	45.209	99.268	0.449
pilG	Neisseria meningitidis 44/76-A	41.451	94.146	0.39
pilG	Neisseria gonorrhoeae MS11	41.451	94.146	0.39