Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   C3F34_RS08170 Genome accession   NZ_CP026412
Coordinates   1753212..1755326 (+) Length   704 a.a.
NCBI ID   WP_171284997.1    Uniprot ID   -
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1748212..1760326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS08150 (C3F34_08150) pilM 1750149..1751207 (+) 1059 WP_044739696.1 pilus assembly protein PilM Machinery gene
  C3F34_RS08155 (C3F34_08155) pilN 1751207..1751884 (+) 678 WP_044739695.1 PilN domain-containing protein Machinery gene
  C3F34_RS08160 (C3F34_08160) comO 1751881..1752627 (+) 747 WP_044739694.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3F34_RS08165 (C3F34_08165) pilP 1752624..1753151 (+) 528 WP_016168706.1 pilus assembly protein PilP Machinery gene
  C3F34_RS08170 (C3F34_08170) pilQ 1753212..1755326 (+) 2115 WP_171284997.1 type IV pilus secretin PilQ family protein Machinery gene
  C3F34_RS08175 (C3F34_08175) aroK 1755364..1755906 (+) 543 WP_044739692.1 shikimate kinase AroK -
  C3F34_RS08180 (C3F34_08180) aroB 1755927..1757009 (+) 1083 WP_044739715.1 3-dehydroquinate synthase -
  C3F34_RS08185 (C3F34_08185) - 1757020..1757892 (+) 873 WP_104442318.1 hypothetical protein -

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 76453.56 Da        Isoelectric Point: 5.2332

>NTDB_id=269186 C3F34_RS08170 WP_171284997.1 1753212..1755326(+) (pilQ) [Acinetobacter sp. ACNIH2]
MNHIFRQFSMGAVAMAVMQAASAQVSITNVVPMQVPGQGTEIRVMFNGIPPQPQAYQLEQPSRLILDFDKAQQTLKQNNI
QVATKEASSVDVSSDAQRSRLTINLADAGAFTTRVEGNTFILKINATDNSFATPVATTAKAPSQGVSNIGFQRGSEGEGQ
VVIDLLGSNTPADVQQQGSKIVVRMLGSKIPAHLTRRLNVNDFATPVATVDAYNDGNSGVITIQSSGSYEYMAYQAENKL
TISLKRPVDKNPMKPRTANNYTGKKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIILKTK
NLDKRRNGNVIWIAPVAELIKSEEDEAKAIAQSVKLAPIQTEYLRLSYAKAADVFKLVTDSRKEAGKNTGVNNQDSLALE
SLLSSRGSIVSDDRTNTLIVNDTAQNIDKIRKMVDLLDVQVQQVMVEARIVRASTSFTKEMGVKWGILSQGINSNNDLLV
GGSDQTLWDLKTPDDDGKYTIQRPDNLNVDLGVTNPAGQIAFSLISLSDFMLDLELSALQADGYGEVISTPKVLTGDKQK
AKVATGQEVPYQTTTNSASGSTATTSFKEALLSLEVTPSITPDGKVQMQLDIAKDSIAGEAPNGELILNKNTITTNVLVN
NGETVILGGVFEQTTSNSQTKVPFLGDIPYIGRLFRKDTKSDDKQELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=269186 C3F34_RS08170 WP_171284997.1 1753212..1755326(+) (pilQ) [Acinetobacter sp. ACNIH2]
ATGAATCATATTTTCCGTCAATTCTCTATGGGTGCGGTTGCCATGGCTGTCATGCAAGCTGCCAGTGCACAAGTTAGCAT
CACGAATGTCGTACCTATGCAAGTACCTGGACAAGGGACTGAAATTCGTGTGATGTTTAACGGAATACCACCACAGCCTC
AAGCTTACCAACTTGAACAACCATCAAGACTGATTTTAGATTTTGATAAAGCGCAACAAACACTAAAGCAAAATAATATT
CAGGTTGCGACAAAAGAAGCCAGTTCTGTCGATGTATCTTCAGACGCGCAGCGTTCTCGATTAACCATTAATCTTGCAGA
TGCAGGTGCTTTCACTACCCGTGTTGAAGGTAATACCTTTATTCTTAAAATAAATGCGACTGATAATAGTTTTGCGACTC
CTGTAGCAACAACGGCTAAAGCACCATCACAAGGTGTTTCCAATATTGGCTTTCAGCGTGGTTCAGAAGGTGAAGGTCAG
GTTGTTATTGATTTGCTCGGCAGCAATACGCCAGCAGATGTGCAGCAACAAGGGAGTAAAATTGTGGTCCGTATGTTGGG
AAGTAAAATTCCGGCACATTTGACTCGCCGCCTCAATGTCAATGATTTTGCAACACCTGTGGCAACAGTAGATGCTTATA
ATGATGGTAATAGTGGTGTAATTACTATTCAGTCCTCTGGTAGCTACGAGTACATGGCTTACCAAGCTGAGAATAAGTTA
ACGATCAGCTTAAAGCGTCCTGTCGATAAGAATCCAATGAAACCGCGTACAGCTAATAACTACACGGGTAAGAAGATTTC
ATTGGATTTCCAAGATATTGAGGTACGTCGTGTATTGCAGTTATTGGCAGATTTTACTGGTATTAACATGGTGGCTGCCG
ATACGGTACAAGGCAATATCACCTTGCGTCTGAAAGATGTTCCATGGGATCAAGCTCTTGATATTATTTTAAAAACAAAA
AATTTAGACAAGCGTCGAAATGGTAATGTGATTTGGATTGCGCCAGTTGCTGAATTGATTAAGTCTGAAGAAGACGAAGC
CAAAGCGATAGCGCAGAGTGTTAAGTTGGCACCAATTCAAACTGAATATTTGCGTTTAAGTTATGCTAAAGCTGCGGATG
TTTTTAAACTTGTAACAGATTCTAGAAAGGAAGCTGGTAAAAATACAGGTGTAAATAATCAAGACTCTTTAGCTTTAGAA
AGTTTATTAAGTTCAAGAGGAAGTATTGTTTCAGATGATCGTACGAATACGTTAATCGTAAATGATACAGCGCAAAACAT
AGACAAAATTAGAAAAATGGTTGATTTGCTGGATGTACAAGTACAGCAGGTTATGGTTGAAGCACGCATCGTACGAGCAT
CTACTTCATTTACTAAAGAGATGGGAGTGAAGTGGGGGATTCTTTCACAAGGGATTAATAGCAATAACGATCTCTTAGTG
GGTGGTAGTGATCAAACTTTATGGGATTTAAAAACCCCAGATGATGATGGAAAATACACTATTCAGCGTCCGGATAACTT
AAACGTTGATTTGGGGGTGACCAATCCTGCGGGTCAAATTGCTTTTAGCTTGATTAGCCTGTCCGATTTTATGTTGGATC
TTGAGCTCTCAGCTTTACAAGCAGATGGCTATGGTGAGGTGATTTCAACACCAAAAGTTTTGACTGGAGATAAACAAAAG
GCCAAGGTAGCGACAGGTCAAGAAGTACCTTATCAAACCACAACGAACTCTGCTTCTGGCTCAACAGCAACTACCTCATT
CAAAGAAGCGCTGCTCAGTTTGGAAGTTACGCCAAGTATTACCCCAGACGGTAAAGTGCAAATGCAGCTTGATATTGCGA
AAGACTCGATTGCAGGCGAAGCGCCAAATGGTGAGTTGATATTAAACAAAAACACAATTACGACCAATGTTTTGGTCAAT
AATGGCGAAACAGTGATTTTGGGTGGTGTATTTGAGCAGACAACCAGTAACTCGCAAACTAAGGTGCCGTTCTTGGGGGA
TATTCCTTATATCGGAAGATTGTTTAGAAAAGATACCAAGTCGGATGACAAGCAAGAGCTGTTGATTTTTGTGACACCAC
GAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(41-120)

Bacterial type II and III secretion system protein (Secretin)

(538-696)

Bacterial type II/III secretion system short domain (Secretin_N)

(362-443)

Secretin and TonB N terminus short domain (STN)

(293-335)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

77.824

100

0.803
  pilQ Acinetobacter baumannii strain A118

77.686

100

0.801
  comQ Acinetobacter baylyi ADP1

74.93

100

0.756
  pilQ Pseudomonas aeruginosa PAK

41.867

100

0.42
  pilQ Legionella pneumophila strain Lp02

36.582

100

0.368
  pilQ Legionella pneumophila strain ERS1305867

36.61

99.716

0.365

Multiple sequence alignment