Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   C3F34_RS08165 Genome accession   NZ_CP026412
Coordinates   1752624..1753151 (+) Length   175 a.a.
NCBI ID   WP_016168706.1    Uniprot ID   R9AQV2
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1747624..1758151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS08150 (C3F34_08150) pilM 1750149..1751207 (+) 1059 WP_044739696.1 pilus assembly protein PilM Machinery gene
  C3F34_RS08155 (C3F34_08155) pilN 1751207..1751884 (+) 678 WP_044739695.1 PilN domain-containing protein Machinery gene
  C3F34_RS08160 (C3F34_08160) comO 1751881..1752627 (+) 747 WP_044739694.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3F34_RS08165 (C3F34_08165) pilP 1752624..1753151 (+) 528 WP_016168706.1 pilus assembly protein PilP Machinery gene
  C3F34_RS08170 (C3F34_08170) pilQ 1753212..1755326 (+) 2115 WP_171284997.1 type IV pilus secretin PilQ family protein Machinery gene
  C3F34_RS08175 (C3F34_08175) aroK 1755364..1755906 (+) 543 WP_044739692.1 shikimate kinase AroK -
  C3F34_RS08180 (C3F34_08180) aroB 1755927..1757009 (+) 1083 WP_044739715.1 3-dehydroquinate synthase -
  C3F34_RS08185 (C3F34_08185) - 1757020..1757892 (+) 873 WP_104442318.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19430.67 Da        Isoelectric Point: 7.9821

>NTDB_id=269185 C3F34_RS08165 WP_016168706.1 1752624..1753151(+) (pilP) [Acinetobacter sp. ACNIH2]
MKFEKIAFALMFGLVLVGCDSRIDAVNMEMVNIRNQQPLPIEPAPVFPPVPTFNYAAHQLKSPFMPSSLAAELKIMSGKR
VYPNFSRQSQPLESYALESLNMKGSMRNQSGQILGLIQTPDGEIERVQVGNYMGMNQGRIVKITPTQIDLVEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=269185 C3F34_RS08165 WP_016168706.1 1752624..1753151(+) (pilP) [Acinetobacter sp. ACNIH2]
ATGAAATTTGAGAAAATAGCATTTGCTTTGATGTTCGGGCTGGTTTTGGTGGGGTGTGATTCACGTATTGATGCGGTAAA
CATGGAAATGGTAAATATTCGTAATCAGCAACCTTTGCCGATTGAACCAGCGCCTGTTTTCCCACCTGTACCGACATTCA
ATTATGCAGCGCATCAATTGAAAAGTCCGTTTATGCCGAGTTCTTTGGCAGCAGAATTAAAAATTATGTCGGGTAAGCGA
GTGTATCCGAATTTTTCGCGTCAGTCGCAGCCATTGGAAAGTTATGCTTTAGAATCCTTAAATATGAAGGGGAGTATGCG
TAATCAGTCTGGGCAAATTTTGGGGTTAATCCAAACGCCTGATGGTGAAATTGAGCGTGTGCAAGTCGGAAATTACATGG
GGATGAATCAAGGGCGAATTGTGAAAATTACGCCTACACAGATTGATCTTGTGGAAATTATTCCCGATGGTCGAGAGGGG
TATGTTGAGCGCCCGCGTAGCCTTGTCTTAATTGGACCCGCACCTTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(30-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9AQV2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

82.286

100

0.823
  comL Acinetobacter baylyi ADP1

73.964

96.571

0.714

Multiple sequence alignment