Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   C3F34_RS08160 Genome accession   NZ_CP026412
Coordinates   1751881..1752627 (+) Length   248 a.a.
NCBI ID   WP_044739694.1    Uniprot ID   A0A5N4WHL4
Organism   Acinetobacter sp. ACNIH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1746881..1757627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3F34_RS08145 (C3F34_08145) ponA 1747458..1749983 (-) 2526 WP_104441387.1 penicillin-binding protein PBP1a -
  C3F34_RS08150 (C3F34_08150) pilM 1750149..1751207 (+) 1059 WP_044739696.1 pilus assembly protein PilM Machinery gene
  C3F34_RS08155 (C3F34_08155) pilN 1751207..1751884 (+) 678 WP_044739695.1 PilN domain-containing protein Machinery gene
  C3F34_RS08160 (C3F34_08160) comO 1751881..1752627 (+) 747 WP_044739694.1 type 4a pilus biogenesis protein PilO Machinery gene
  C3F34_RS08165 (C3F34_08165) pilP 1752624..1753151 (+) 528 WP_016168706.1 pilus assembly protein PilP Machinery gene
  C3F34_RS08170 (C3F34_08170) pilQ 1753212..1755326 (+) 2115 WP_171284997.1 type IV pilus secretin PilQ family protein Machinery gene
  C3F34_RS08175 (C3F34_08175) aroK 1755364..1755906 (+) 543 WP_044739692.1 shikimate kinase AroK -
  C3F34_RS08180 (C3F34_08180) aroB 1755927..1757009 (+) 1083 WP_044739715.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 27888.48 Da        Isoelectric Point: 4.8636

>NTDB_id=269184 C3F34_RS08160 WP_044739694.1 1751881..1752627(+) (comO) [Acinetobacter sp. ACNIH2]
MSRDEFDDLNQEAVVKTKKKMTVDKFFQQFNTLDPNNYGSWPLSVKITCWIFIVFLICAVGYFVVIKPQLDAISSAHAQE
QNLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLEPEVKQEFFVEQP
ISIEATGDYHAFGSFASGIAALPRIVTLHDFDISSSISTDKKSEIPQVTYVAKARTYRYIGNSDDQNVAAGANATTPPAQ
VTPEGAKK

Nucleotide


Download         Length: 747 bp        

>NTDB_id=269184 C3F34_RS08160 WP_044739694.1 1751881..1752627(+) (comO) [Acinetobacter sp. ACNIH2]
ATGAGTCGTGATGAGTTTGATGATCTAAATCAAGAAGCCGTTGTTAAAACTAAGAAAAAAATGACAGTAGATAAGTTTTT
TCAACAATTTAACACGTTGGACCCGAATAATTACGGCAGTTGGCCTTTATCAGTCAAAATTACCTGCTGGATTTTTATTG
TCTTTTTAATTTGTGCGGTTGGCTATTTTGTTGTAATCAAGCCGCAATTAGATGCGATTTCTAGCGCACATGCGCAAGAG
CAAAACTTGCTAAATGAATTCAGAGAAAAGGATTCTAAGTTACGTAATTTGCAACAATATCAAGCTCAGTTGCAGGAAAT
GGAGGCGAACTTTAATCAGCAATTGGAGCAATTGCCAAAGGAAACTGAAATTCCAGGTCTAGTTGAAGACATTAACGTGA
CAGGTGTGAATTCTGGGCTGAAATTTAAAAATATTCGTTTAGAGCCTGAAGTCAAACAAGAGTTTTTTGTAGAGCAGCCA
ATTAGTATTGAAGCGACAGGCGATTATCATGCCTTTGGTTCTTTTGCGAGTGGCATTGCAGCATTACCTCGAATTGTGAC
CTTACATGATTTTGATATCAGTTCTTCAATTAGTACGGATAAAAAATCTGAAATTCCACAAGTGACTTATGTTGCGAAGG
CGCGTACCTATCGCTATATAGGTAATTCAGATGATCAAAATGTTGCAGCTGGTGCGAATGCTACAACTCCTCCTGCTCAA
GTTACTCCAGAAGGAGCGAAGAAATGA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N4WHL4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

71.488

97.581

0.698
  pilO Acinetobacter baumannii D1279779

69.008

97.581

0.673

Multiple sequence alignment