Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BA6348_RS13620 Genome accession   NZ_CP026363
Coordinates   2715330..2716574 (+) Length   414 a.a.
NCBI ID   WP_007786885.1    Uniprot ID   A0A3M8BA79
Organism   Brevibacillus agri strain DSM 6348     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2710330..2721574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BA6348_RS13595 (BA6348_13595) - 2711111..2711380 (+) 270 WP_005834108.1 DUF3243 domain-containing protein -
  BA6348_RS13600 (BA6348_13600) - 2711489..2712268 (+) 780 WP_005834105.1 YmfK family protein -
  BA6348_RS13605 (BA6348_13605) - 2712281..2713186 (+) 906 WP_005834104.1 helix-turn-helix domain-containing protein -
  BA6348_RS13610 (BA6348_13610) rimO 2713299..2714645 (+) 1347 WP_005834102.1 30S ribosomal protein S12 methylthiotransferase RimO -
  BA6348_RS13615 (BA6348_13615) pgsA 2714646..2715221 (+) 576 WP_005834099.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BA6348_RS13620 (BA6348_13620) cinA 2715330..2716574 (+) 1245 WP_007786885.1 competence/damage-inducible protein A Machinery gene
  BA6348_RS13625 (BA6348_13625) - 2716582..2718171 (+) 1590 WP_007786887.1 DEAD/DEAH box helicase -
  BA6348_RS13630 (BA6348_13630) recA 2718341..2719399 (+) 1059 WP_025846053.1 recombinase RecA Machinery gene
  BA6348_RS13635 (BA6348_13635) - 2719475..2720122 (+) 648 WP_005834091.1 RecX family transcriptional regulator -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 44780.23 Da        Isoelectric Point: 4.9954

>NTDB_id=268898 BA6348_RS13620 WP_007786885.1 2715330..2716574(+) (cinA) [Brevibacillus agri strain DSM 6348]
MRAEIIAVGTELLLGQIANTNAQFLSQKLAEIGVGVYFHTVVGDNSERLRQVIALASGRSDLVILTGGLGPTQDDLTKET
VAAHVGVGLETNQEAMERIEQFFLQRGIVMTENNRKQALVLSGSHVFSNDFGMAPGMAIRHDSCTFVLLPGPPSELYPMV
DRYVMPYLTDLLPEKQVFHSHVLRFYGIGESALEERLLDLIEKQDNPTIAPYAKEFEVTLRLTARAATAEEGEALILPVE
EEIRKRVGEYVYGMGEDSSLHAVLVSELKKRNETIACAESCTGGTVASLITSVPGSSSVFQGGVVCYTNDVKNRLLDVPE
EVLNTDGAVSRQTAQLLAENVRAKLGATYGVSVTGVAGPDPSEGKPVGLVYVGIAGEGMPTVVKELRLAGRRQAIVGRAA
KFALFYALQMQKER

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=268898 BA6348_RS13620 WP_007786885.1 2715330..2716574(+) (cinA) [Brevibacillus agri strain DSM 6348]
ATGAGAGCGGAGATTATCGCAGTAGGTACCGAGCTTTTGCTAGGCCAAATTGCCAACACAAATGCCCAGTTTCTGTCGCA
GAAGCTGGCGGAAATTGGCGTGGGAGTCTATTTCCATACGGTTGTGGGAGATAACTCAGAGCGATTGCGGCAGGTCATTG
CGCTCGCATCCGGCCGATCCGATCTCGTCATTTTGACAGGGGGGCTTGGACCGACCCAGGATGACCTGACAAAAGAAACG
GTGGCAGCACACGTGGGCGTCGGGCTGGAAACGAACCAGGAAGCCATGGAAAGAATTGAACAATTCTTTTTGCAACGTGG
GATTGTCATGACGGAGAACAATCGGAAGCAGGCGCTGGTGCTCTCAGGCAGCCATGTCTTTTCCAACGACTTCGGGATGG
CGCCTGGGATGGCGATCCGTCATGACAGTTGTACGTTCGTGCTGCTCCCTGGACCGCCGAGCGAGCTGTACCCGATGGTG
GATCGCTACGTGATGCCGTACTTGACAGACCTGTTGCCAGAGAAGCAAGTATTCCATTCCCATGTGCTGCGCTTCTACGG
AATCGGGGAATCCGCTCTGGAGGAGCGGCTGCTGGATTTGATTGAAAAGCAGGACAACCCGACGATCGCGCCGTATGCCA
AGGAGTTTGAAGTGACGCTCAGGCTCACGGCGAGAGCGGCTACGGCAGAAGAAGGGGAAGCGCTGATTTTGCCGGTGGAA
GAAGAAATTCGCAAGCGTGTTGGCGAGTATGTGTACGGGATGGGAGAAGATTCGTCCCTGCATGCCGTCTTGGTGAGCGA
GCTGAAAAAGCGAAACGAAACGATCGCATGTGCGGAAAGCTGTACAGGCGGCACGGTCGCTTCGCTGATTACGTCCGTTC
CCGGCAGCTCGTCTGTTTTTCAAGGCGGCGTAGTCTGTTATACAAACGATGTGAAAAACCGGCTGCTTGACGTGCCCGAA
GAGGTTTTGAATACGGACGGTGCGGTCAGTCGGCAAACGGCGCAGTTGCTTGCAGAAAATGTGCGAGCCAAGCTGGGAGC
CACATACGGCGTGTCCGTGACGGGTGTGGCTGGACCCGACCCTTCGGAGGGCAAGCCTGTTGGCCTTGTCTACGTCGGAA
TTGCGGGTGAAGGGATGCCCACAGTAGTAAAAGAACTGCGCCTGGCTGGCAGAAGACAGGCGATTGTTGGGCGTGCCGCC
AAATTTGCGCTATTTTATGCGCTGCAAATGCAAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M8BA79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.574

99.758

0.514
  cinA Streptococcus mitis SK321

47.458

99.758

0.473
  cinA Streptococcus mitis NCTC 12261

47.458

99.758

0.473
  cinA Streptococcus pneumoniae TIGR4

47.215

99.758

0.471
  cinA Streptococcus pneumoniae Rx1

46.973

99.758

0.469
  cinA Streptococcus pneumoniae R6

46.973

99.758

0.469
  cinA Streptococcus pneumoniae D39

46.731

99.758

0.466
  cinA Streptococcus mutans UA159

45.614

96.377

0.44
  cinA Streptococcus suis isolate S10

41.013

95.411

0.391

Multiple sequence alignment