Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   BV11031_RS21880 Genome accession   NZ_CP026362
Coordinates   4149309..4150031 (+) Length   240 a.a.
NCBI ID   WP_010328776.1    Uniprot ID   -
Organism   Bacillus vallismortis strain DSM 11031     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4144309..4155031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BV11031_RS21855 (BV11031_21825) degS 4144639..4145796 (+) 1158 WP_010328781.1 two-component sensor histidine kinase DegS Regulator
  BV11031_RS21860 (BV11031_21830) degU 4145879..4146568 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BV11031_RS21865 (BV11031_21835) - 4146666..4147511 (+) 846 WP_010328779.1 DegV family protein -
  BV11031_RS21870 (BV11031_21840) comFA 4147616..4148989 (+) 1374 WP_010328778.1 ATP-dependent helicase ComFA Machinery gene
  BV11031_RS21875 (BV11031_21845) - 4149049..4149345 (+) 297 WP_010328777.1 competence protein ComFB -
  BV11031_RS21880 (BV11031_21850) comFC 4149309..4150031 (+) 723 WP_010328776.1 amidophosphoribosyltransferase Machinery gene
  BV11031_RS21885 (BV11031_21855) - 4150103..4150522 (+) 420 WP_010328775.1 TIGR03826 family flagellar region protein -
  BV11031_RS21890 (BV11031_21860) flgM 4150602..4150868 (+) 267 WP_010328774.1 flagellar biosynthesis anti-sigma factor FlgM -
  BV11031_RS21895 (BV11031_21865) flgN 4150883..4151365 (+) 483 WP_010328773.1 flagellar protein FlgN -
  BV11031_RS21900 (BV11031_21870) flgK 4151384..4152907 (+) 1524 WP_010328772.1 flagellar hook-associated protein FlgK -
  BV11031_RS21905 (BV11031_21875) flgL 4152917..4153813 (+) 897 WP_010328771.1 flagellar hook-associated protein FlgL -
  BV11031_RS21910 (BV11031_21880) - 4153860..4154435 (+) 576 WP_010328770.1 DUF6470 family protein -
  BV11031_RS21915 (BV11031_21885) fliW 4154456..4154887 (+) 432 WP_010328769.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27452.95 Da        Isoelectric Point: 9.3246

>NTDB_id=268871 BV11031_RS21880 WP_010328776.1 4149309..4150031(+) (comFC) [Bacillus vallismortis strain DSM 11031]
MPKEAGGGIHKLICLLCDTPFSQPVTWRALFLLKLEEKVCHSCRSKFKKITGHICPLCGKPQSIHELCKDCETWKLRMND
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDNHVVLVPIPLSKEREKERGFNQAQLLAECL
DRPIRHALFRLNNEKQSKKTKAERLLSEHIFDTKNNSVEGMNIILIDDLYTTGATLHFAARCLLEKGKAGSVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=268871 BV11031_RS21880 WP_010328776.1 4149309..4150031(+) (comFC) [Bacillus vallismortis strain DSM 11031]
ATGCCAAAAGAAGCAGGAGGGGGAATTCATAAACTGATCTGTCTATTATGTGATACGCCATTTTCTCAACCTGTTACATG
GAGAGCTCTTTTTTTATTAAAGCTTGAAGAAAAGGTCTGTCATTCCTGCAGAAGCAAATTTAAAAAAATCACAGGGCATA
TCTGCCCGCTATGCGGCAAGCCTCAATCCATTCATGAGCTATGCAAGGATTGCGAGACGTGGAAATTAAGGATGAATGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACACTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTCTCTTCAACCTTCTCAAAGGTTTACCCCGATAACCATGTTG
TTCTCGTTCCTATTCCGCTGAGCAAGGAACGGGAAAAGGAGCGTGGGTTTAATCAGGCACAGCTCCTCGCAGAATGCTTA
GACCGTCCTATCCGCCATGCCCTCTTCCGCTTGAATAATGAGAAACAGTCTAAGAAAACGAAAGCAGAACGCCTGCTTTC
AGAGCATATTTTTGATACAAAAAACAATTCAGTCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CTACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAGGGGAAAGCCGGTTCTGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

86.25

100

0.863

Multiple sequence alignment