Detailed information
Bioinformatically predicted
Overview
| Name | pilQ | Type | Machinery gene |
| Locus tag | PRJ_RS25765 | Genome accession | NZ_CP026332 |
| Coordinates | 5528672..5529934 (-) | Length | 420 a.a. |
| NCBI ID | WP_104962713.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. XWY-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5523672..5534934
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PRJ_RS25750 (PRJ_5102) | - | 5525350..5526939 (-) | 1590 | WP_020191281.1 | SPOR domain-containing protein | - |
| PRJ_RS25755 (PRJ_5103) | aroB | 5526955..5528052 (-) | 1098 | WP_010955624.1 | 3-dehydroquinate synthase | - |
| PRJ_RS25760 (PRJ_5104) | aroK | 5528149..5528667 (-) | 519 | WP_010955625.1 | shikimate kinase AroK | - |
| PRJ_RS25765 (PRJ_5105) | pilQ | 5528672..5529934 (-) | 1263 | WP_104962713.1 | type IV pilus secretin PilQ | Machinery gene |
| PRJ_RS25770 (PRJ_5106) | - | 5529858..5530859 (-) | 1002 | WP_104962714.1 | pilus assembly protein PilP | - |
| PRJ_RS25775 (PRJ_5107) | - | 5530871..5531407 (-) | 537 | WP_104962715.1 | PilN domain-containing protein | - |
| PRJ_RS25780 (PRJ_5108) | pilM | 5531404..5532285 (-) | 882 | WP_104962716.1 | type IV pilus biogenesis protein PilM | - |
Sequence
Protein
Download Length: 420 a.a. Molecular weight: 45629.36 Da Isoelectric Point: 5.2012
>NTDB_id=268275 PRJ_RS25765 WP_104962713.1 5528672..5529934(-) (pilQ) [Pseudomonas sp. XWY-1]
MKTWMKYLLATLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLRLQDVPWDQALDLVLR
SKGLSRRQEGNVLLVAPAAEFAAQSAGARVSQALDAHLQPLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLSVDERT
NTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLERAGSSIGL
GLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATSVSFREASLSLEVTPQITPDNKV
IMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKS
ELLVFLTPRIMSDQAIAVSR
MKTWMKYLLATLLSIPLASATPYQGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSVTLRLQDVPWDQALDLVLR
SKGLSRRQEGNVLLVAPAAEFAAQSAGARVSQALDAHLQPLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLSVDERT
NTLVVHLPADRLAEMRQLVAQLDVPVRQVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLERAGSSIGL
GLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQSGATSVSFREASLSLEVTPQITPDNKV
IMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKS
ELLVFLTPRIMSDQAIAVSR
Nucleotide
Download Length: 1263 bp
>NTDB_id=268275 PRJ_RS25765 WP_104962713.1 5528672..5529934(-) (pilQ) [Pseudomonas sp. XWY-1]
ATGAAAACGTGGATGAAATACCTGTTGGCGACCCTGCTGTCGATCCCGCTGGCTTCGGCGACGCCTTACCAGGGTGAACC
CCTGTCGCTGAACTTCCAGGATGTTGAGGTGCGTGCGGTGCTGCAGGTGCTGGCTGACTACGCTGGCGTCAACCTGGTCG
CCAGTGACGCAGTACAAGGCAGTGTCACTTTGCGTTTGCAGGACGTGCCGTGGGATCAGGCGCTTGACCTGGTGCTGCGC
AGCAAGGGCCTGTCCCGGCGCCAGGAGGGCAATGTGCTGTTGGTGGCACCTGCAGCCGAGTTTGCCGCGCAATCAGCAGG
CGCCCGGGTGAGTCAGGCGCTGGATGCGCACCTGCAGCCATTACGTCGGGAGCTGCTGCCCATTCACCACGCCAAGGCCG
CCGATCTGGCGCAGTTGCTGCTGGCAGGCCTGGAGGGTGACGGCATCCCTCCGGCTAGCTTGAGTGTCGATGAGCGCACC
AACACGTTGGTGGTGCATCTGCCCGCTGACCGCCTGGCCGAGATGCGCCAGCTGGTGGCGCAGTTGGATGTGCCGGTGCG
CCAGGTAGCGATCGAGGCGCGTATCGTCGAGGCCAACGTCGATTATGAGAAAAGCCTGGGGGTACGCTGGGGTGGGCCGC
TGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTG
GGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGCGAAATCATTTCGCA
GCCCAAGGTGGTCACGGCTGACAAGGAAACGGCGAGGATCCTCAAGGGTACCGAGGTGCCTTACCAGGAAACGAGCCAAA
GCGGCGCTACCTCGGTATCGTTTCGCGAAGCCTCGCTGTCGCTGGAAGTAACGCCACAGATCACCCCGGACAACAAGGTG
ATCATGACCGTCAGGGTGACCAAGGACGAGCCGGATTACGTCAATGCCTTGAACAACGTACCGCCGATTCGCAAGAACGA
GGTCAATGCCAAGGTTCGTGTGGCTGACGGCGAAACGATCGTGATCGGTGGCGTCTACTCGACTTCGCAAAACAATGTGG
TCGACAAGGTGCCATTTTTCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAAAAATCC
GAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
ATGAAAACGTGGATGAAATACCTGTTGGCGACCCTGCTGTCGATCCCGCTGGCTTCGGCGACGCCTTACCAGGGTGAACC
CCTGTCGCTGAACTTCCAGGATGTTGAGGTGCGTGCGGTGCTGCAGGTGCTGGCTGACTACGCTGGCGTCAACCTGGTCG
CCAGTGACGCAGTACAAGGCAGTGTCACTTTGCGTTTGCAGGACGTGCCGTGGGATCAGGCGCTTGACCTGGTGCTGCGC
AGCAAGGGCCTGTCCCGGCGCCAGGAGGGCAATGTGCTGTTGGTGGCACCTGCAGCCGAGTTTGCCGCGCAATCAGCAGG
CGCCCGGGTGAGTCAGGCGCTGGATGCGCACCTGCAGCCATTACGTCGGGAGCTGCTGCCCATTCACCACGCCAAGGCCG
CCGATCTGGCGCAGTTGCTGCTGGCAGGCCTGGAGGGTGACGGCATCCCTCCGGCTAGCTTGAGTGTCGATGAGCGCACC
AACACGTTGGTGGTGCATCTGCCCGCTGACCGCCTGGCCGAGATGCGCCAGCTGGTGGCGCAGTTGGATGTGCCGGTGCG
CCAGGTAGCGATCGAGGCGCGTATCGTCGAGGCCAACGTCGATTATGAGAAAAGCCTGGGGGTACGCTGGGGTGGGCCGC
TGTACGGCGAGAAACTGCGGCCCGGCAAGGAGCTGTTCGTCGACCTCGGTCTGGAGCGTGCCGGCAGCAGTATCGGCCTG
GGTTTGTTGCGCGGTGACGTGCTGCTGGACCTGGAGCTCAGTGCCATGGAAAAAAGCGGCAACGGCGAAATCATTTCGCA
GCCCAAGGTGGTCACGGCTGACAAGGAAACGGCGAGGATCCTCAAGGGTACCGAGGTGCCTTACCAGGAAACGAGCCAAA
GCGGCGCTACCTCGGTATCGTTTCGCGAAGCCTCGCTGTCGCTGGAAGTAACGCCACAGATCACCCCGGACAACAAGGTG
ATCATGACCGTCAGGGTGACCAAGGACGAGCCGGATTACGTCAATGCCTTGAACAACGTACCGCCGATTCGCAAGAACGA
GGTCAATGCCAAGGTTCGTGTGGCTGACGGCGAAACGATCGTGATCGGTGGCGTCTACTCGACTTCGCAAAACAATGTGG
TCGACAAGGTGCCATTTTTCGGCGATCTGCCGTATGTTGGGCGGCTGTTTCGACGCGATGCATTACAAGAGAAAAAATCC
GAGCTGCTGGTCTTCCTGACTCCGCGTATCATGAGTGACCAGGCGATTGCTGTGAGTCGTTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilQ | Pseudomonas aeruginosa PAK |
59.174 |
100 |
0.614 |
| pilQ | Acinetobacter baumannii strain A118 |
41.215 |
100 |
0.452 |
| pilQ | Acinetobacter baumannii D1279779 |
41.215 |
100 |
0.452 |
| comQ | Acinetobacter baylyi ADP1 |
42.316 |
100 |
0.452 |
| pilQ | Legionella pneumophila strain Lp02 |
43.029 |
99.048 |
0.426 |
| pilQ | Legionella pneumophila strain ERS1305867 |
43.029 |
99.048 |
0.426 |
| pilQ | Vibrio cholerae O1 biovar El Tor strain E7946 |
41.943 |
100 |
0.421 |
| pilQ | Vibrio cholerae strain A1552 |
41.943 |
100 |
0.421 |
| pilQ | Vibrio campbellii strain DS40M4 |
40.23 |
100 |
0.417 |