Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   C1N50_RS03080 Genome accession   NZ_CP026321
Coordinates   603166..604389 (-) Length   407 a.a.
NCBI ID   WP_045395353.1    Uniprot ID   A0A812GMB4
Organism   Vibrio campbellii strain BoB-53     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598166..609389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N50_RS03040 (C1N50_03040) rpsP 598218..598466 (+) 249 WP_004410028.1 30S ribosomal protein S16 -
  C1N50_RS03045 (C1N50_03045) rimM 598494..599042 (+) 549 WP_005534055.1 ribosome maturation factor RimM -
  C1N50_RS03050 (C1N50_03050) trmD 599070..599813 (+) 744 WP_005534054.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  C1N50_RS03055 (C1N50_03055) rplS 599855..600208 (+) 354 WP_005379971.1 50S ribosomal protein L19 -
  C1N50_RS03060 (C1N50_03060) yacG 600584..600778 (-) 195 WP_005534053.1 DNA gyrase inhibitor YacG -
  C1N50_RS03065 (C1N50_03065) zapD 600841..601581 (-) 741 WP_012128881.1 cell division protein ZapD -
  C1N50_RS03070 (C1N50_03070) coaE 601609..602223 (-) 615 WP_103412701.1 dephospho-CoA kinase -
  C1N50_RS03075 (C1N50_03075) pilD 602224..603093 (-) 870 WP_050910736.1 A24 family peptidase Machinery gene
  C1N50_RS03080 (C1N50_03080) pilC 603166..604389 (-) 1224 WP_045395353.1 type II secretion system F family protein Machinery gene
  C1N50_RS03085 (C1N50_03085) pilB 604424..606109 (-) 1686 WP_038891992.1 type IV-A pilus assembly ATPase PilB Machinery gene
  C1N50_RS03090 (C1N50_03090) - 606113..606592 (-) 480 WP_103412702.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  C1N50_RS03100 (C1N50_03100) nadC 606858..607745 (-) 888 WP_012128875.1 carboxylating nicotinate-nucleotide diphosphorylase -
  C1N50_RS03105 (C1N50_03105) ampD 607838..608389 (+) 552 WP_051118345.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44966.22 Da        Isoelectric Point: 10.3971

>NTDB_id=268126 C1N50_RS03080 WP_045395353.1 603166..604389(-) (pilC) [Vibrio campbellii strain BoB-53]
MKTIAPQLKNYRWKGINSSGKKTSGNVLAMTEVEVRERLDAQHIKIKKLKKGSISFITKISHRVKGKDITIFTRQIATML
MTGVPIVQALKLVSENHKKAEMKSILMSVTRAVEAGTPMSKAMRTASTHFDPLYTDLIATGEQSGNLSQVFERLATYREK
SEQLRAKVIKALIYPAMVVLVALGVSYLMLTRVIPEFEKMFTGFGADLPAFTQMVLNLSAWTQNWGPFIGLSFVSLLISG
KIMSQRSDSFRLLAARSSLRVPILGPVLSKAAIAKFSRTLATSFSAGIPILTALKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYIAMRNCHVFPELVLQMVMIGEESGRLDDMLNKIAAIYEFEVDNTVDNLSKILEPLIIVFLGVVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=268126 C1N50_RS03080 WP_045395353.1 603166..604389(-) (pilC) [Vibrio campbellii strain BoB-53]
ATGAAAACCATCGCTCCTCAACTTAAGAACTACCGTTGGAAAGGTATTAATAGCTCAGGTAAAAAAACCTCTGGGAACGT
GCTCGCCATGACCGAAGTCGAGGTAAGAGAGCGCCTCGATGCTCAACACATCAAGATAAAGAAACTGAAGAAAGGCAGCA
TTTCTTTTATCACCAAGATCAGTCATCGCGTCAAAGGCAAAGACATCACGATATTTACTCGCCAAATTGCCACTATGCTA
ATGACGGGCGTACCGATTGTTCAGGCACTTAAGTTGGTTTCAGAGAACCACAAAAAAGCCGAGATGAAGTCGATTCTGAT
GAGTGTCACACGAGCGGTAGAGGCAGGGACACCGATGTCGAAAGCCATGCGCACTGCCAGTACACATTTTGATCCGCTTT
ATACAGACCTAATCGCGACTGGTGAGCAGTCCGGTAACCTATCTCAAGTCTTTGAGCGTTTGGCAACTTATCGAGAAAAG
AGCGAGCAGTTGCGCGCAAAAGTGATTAAAGCGCTCATTTACCCAGCGATGGTGGTTTTAGTAGCGCTTGGGGTTTCCTA
TTTAATGCTGACTAGAGTTATCCCTGAGTTTGAAAAGATGTTTACAGGTTTTGGAGCCGACTTACCCGCCTTTACTCAGA
TGGTACTCAACCTCTCTGCTTGGACCCAAAACTGGGGCCCTTTTATTGGACTGAGTTTTGTGAGCCTGCTTATTTCCGGC
AAAATTATGTCGCAGCGATCCGATTCATTTCGCCTTTTAGCTGCGCGTTCGAGTTTAAGAGTCCCTATCTTGGGGCCAGT
ATTATCCAAAGCCGCCATTGCCAAGTTTAGCCGTACTTTAGCAACCAGCTTTAGTGCGGGTATTCCAATTCTCACCGCAT
TAAAAACCACCTCAAAAACCTCCGGTAACATGCACTATCAATTAGCAATTGAAGAAGTGTATCGAGACACTGCAGCTGGT
ATGCCGATGTATATTGCCATGCGTAACTGTCACGTTTTCCCTGAGCTAGTACTGCAAATGGTCATGATAGGTGAAGAGTC
AGGTCGATTGGATGATATGCTCAACAAGATAGCCGCTATTTATGAGTTCGAAGTCGATAATACCGTTGATAATCTGAGTA
AGATTTTAGAACCATTGATCATCGTCTTTCTTGGCGTGGTGGTTGGTGGTCTAGTCACAGCAATGTACTTACCAATCTTT
AATTTGATGAGCGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A812GMB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

99.509

100

0.995
  pilC Vibrio cholerae strain A1552

73.75

98.28

0.725
  pilC Acinetobacter baylyi ADP1

42.462

97.789

0.415
  pilC Acinetobacter baumannii D1279779

40.447

99.017

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.604

99.263

0.393
  pilG Neisseria gonorrhoeae MS11

39.066

100

0.391
  pilG Neisseria meningitidis 44/76-A

38.235

100

0.383

Multiple sequence alignment