Detailed information NTG0268125

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: C1N50_RS03075
• Genome accession: NZ_CP026321
• Coordinates: 602224..603093 (-)
• Length: 289 a.a.
• NCBI ID: WP_050910736.1
• Uniprot ID: -
• Organism: Vibrio campbellii strain BoB-53
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 597224..608093

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1N50_RS03040 (C1N50_03040)	rpsP	598218..598466 (+)	249	WP_004410028.1	30S ribosomal protein S16	-
C1N50_RS03045 (C1N50_03045)	rimM	598494..599042 (+)	549	WP_005534055.1	ribosome maturation factor RimM	-
C1N50_RS03050 (C1N50_03050)	trmD	599070..599813 (+)	744	WP_005534054.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
C1N50_RS03055 (C1N50_03055)	rplS	599855..600208 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
C1N50_RS03060 (C1N50_03060)	yacG	600584..600778 (-)	195	WP_005534053.1	DNA gyrase inhibitor YacG	-
C1N50_RS03065 (C1N50_03065)	zapD	600841..601581 (-)	741	WP_012128881.1	cell division protein ZapD	-
C1N50_RS03070 (C1N50_03070)	coaE	601609..602223 (-)	615	WP_103412701.1	dephospho-CoA kinase	-
C1N50_RS03075 (C1N50_03075)	pilD	602224..603093 (-)	870	WP_050910736.1	A24 family peptidase	Machinery gene
C1N50_RS03080 (C1N50_03080)	pilC	603166..604389 (-)	1224	WP_045395353.1	type II secretion system F family protein	Machinery gene
C1N50_RS03085 (C1N50_03085)	pilB	604424..606109 (-)	1686	WP_038891992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
C1N50_RS03090 (C1N50_03090)	-	606113..606592 (-)	480	WP_103412702.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
C1N50_RS03100 (C1N50_03100)	nadC	606858..607745 (-)	888	WP_012128875.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32633.90 Da
• Isoelectric Point: 7.8754

>NTDB_id=268125 C1N50_RS03075 WP_050910736.1 602224..603093(-) (pilD) [Vibrio campbellii strain BoB-53]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEKLTLSVPRSSCQQCGTQIRIR
DNIPVISWLLLRGKCHNCQSPISVRYPLIELLTAFCSGFIAFHFGFSYFTVALVFFTFVLIAATFIDLDTMLLPDQLTLP
LMWAGIALALAGISPVSLQDSIIGAMAGYLCLWSVYWLFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLIQLRLQKQGIEKAFPFGPYLAIAGWVSLIWGHQILNWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=268125 C1N50_RS03075 WP_050910736.1 602224..603093(-) (pilD) [Vibrio campbellii strain BoB-53]
ATGGAAGTATTCCAGTACTACCCATGGCTATTCGTTGTGTTTGCCACAATTTTCGGTTTGATTGTGGGTAGTTTCCTCAA
CGTGGTTATTTACCGTTTACCCAAGATCATGGAACTAGAATGGCGACGTGAGTGCGCTGAATCCTTCCCTGAATACAAAA
TCGAACCACCAAAAGAAAAACTGACATTAAGCGTACCACGGTCATCTTGTCAGCAATGTGGCACGCAAATTCGTATTCGT
GACAATATCCCAGTGATTAGTTGGCTGCTTCTGCGCGGTAAATGCCACAACTGCCAATCTCCTATCAGCGTACGCTACCC
TCTTATCGAACTGCTTACTGCCTTTTGTTCGGGTTTTATCGCTTTTCACTTCGGTTTTAGCTACTTCACTGTCGCGCTGG
TTTTCTTTACCTTTGTATTGATTGCTGCCACGTTTATCGACCTCGATACTATGTTGTTGCCAGACCAACTGACTCTACCA
TTGATGTGGGCAGGTATCGCACTTGCTCTTGCTGGTATCAGTCCTGTCAGCCTACAAGATTCTATCATTGGTGCAATGGC
GGGCTACCTGTGTCTTTGGAGTGTTTACTGGCTGTTTAAACTTCTAACAGGCAAAGAAGGCATGGGCTATGGTGACTTTA
AACTCCTTGCGGCATTGGGCGCTTGGCTGGGTTGGCAATCTCTACCGATGATCATTTTGCTCTCTTCGGTGGTCGGCGTC
ATCTTTGGTCTTATCCAACTGCGCTTGCAAAAACAAGGTATCGAGAAAGCCTTTCCTTTCGGCCCTTACCTTGCGATTGC
AGGATGGGTGAGCCTAATTTGGGGCCATCAAATCCTCAACTGGTACTTTACGTCGATTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	98.27	100	0.983
pilD	Vibrio cholerae strain A1552	75.347	99.654	0.751
pilD	Acinetobacter baumannii D1279779	52.768	93.772	0.495
pilD	Acinetobacter nosocomialis M2	52.768	93.772	0.495
pilD	Neisseria gonorrhoeae MS11	45.652	95.502	0.436