Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   C2U40_RS02900 Genome accession   NZ_CP026217
Coordinates   608692..609012 (-) Length   106 a.a.
NCBI ID   WP_011707247.1    Uniprot ID   A0AAX0XL99
Organism   Aeromonas sp. ASNIH4     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 603692..614012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U40_RS02880 (C2U40_02880) - 604012..604689 (-) 678 WP_103829020.1 DnaT-like ssDNA-binding domain-containing protein -
  C2U40_RS02885 (C2U40_02885) - 605030..606001 (+) 972 WP_017410997.1 response regulator -
  C2U40_RS02890 (C2U40_02890) - 606075..607472 (-) 1398 WP_011707249.1 peptide MFS transporter -
  C2U40_RS02895 (C2U40_02895) galU 607686..608597 (-) 912 WP_029305299.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  C2U40_RS02900 (C2U40_02900) comEA 608692..609012 (-) 321 WP_011707247.1 ComEA family DNA-binding protein Machinery gene
  C2U40_RS02905 (C2U40_02905) cysQ 609181..609951 (+) 771 WP_181014945.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  C2U40_RS02910 (C2U40_02910) - 610032..610328 (-) 297 WP_005309589.1 YciI family protein -
  C2U40_RS02915 (C2U40_02915) - 610354..610905 (-) 552 WP_024946223.1 septation protein A -
  C2U40_RS02920 (C2U40_02920) - 611010..612515 (-) 1506 WP_103829022.1 aminotransferase class V-fold PLP-dependent enzyme -
  C2U40_RS02925 (C2U40_02925) - 612740..613375 (+) 636 WP_016351856.1 hemolysin III family protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11183.03 Da        Isoelectric Point: 9.5773

>NTDB_id=267854 C2U40_RS02900 WP_011707247.1 608692..609012(-) (comEA) [Aeromonas sp. ASNIH4]
MNYKTLTATLLLSCLPLLSQPLLAADKPAAKPATTVTAAKESGKVNLNTASINELTALKGIGEKKAQAIVDYREKQGKFT
TVDQLADVSGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=267854 C2U40_RS02900 WP_011707247.1 608692..609012(-) (comEA) [Aeromonas sp. ASNIH4]
ATGAACTACAAGACCCTCACCGCCACCCTGCTGCTGAGCTGCCTGCCCCTGCTCAGCCAACCTCTGCTGGCAGCCGACAA
GCCTGCTGCCAAGCCGGCAACCACGGTCACCGCCGCCAAGGAGAGCGGCAAGGTGAACCTGAACACTGCCAGTATCAATG
AGTTGACTGCGCTCAAGGGCATTGGTGAGAAGAAGGCTCAGGCCATCGTCGATTACCGCGAGAAGCAGGGCAAGTTCACT
ACCGTGGATCAGCTGGCCGATGTGAGCGGCATCGGGCCAGCCACGCTGGAAGCAAATCGGGACATGATTATCGTCAAGTA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae strain A1552

53.636

100

0.557
  comEA Vibrio cholerae C6706

53.636

100

0.557
  comE1/comEA Haemophilus influenzae Rd KW20

43.243

100

0.453
  comEA Vibrio parahaemolyticus RIMD 2210633

46.939

92.453

0.434
  comEA Legionella pneumophila strain ERS1305867

41.837

92.453

0.387
  comEA Legionella pneumophila str. Paris

41.837

92.453

0.387
  comEA Vibrio campbellii strain DS40M4

41

94.34

0.387
  comEA/comE1 Glaesserella parasuis strain SC1401

63.492

59.434

0.377
  comEA/celA/cilE Streptococcus mitis NCTC 12261

51.316

71.698

0.368

Multiple sequence alignment