Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   C2E46_RS01145 Genome accession   NZ_CP026082
Coordinates   199362..199775 (+) Length   137 a.a.
NCBI ID   WP_000244259.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain YZ1605     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 194362..204775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2E46_RS01120 (C2E46_01130) - 195053..195418 (+) 366 WP_000285374.1 DUF1033 family protein -
  C2E46_RS01125 (C2E46_01135) - 195647..197107 (+) 1461 WP_000468685.1 IS1182-like element IS1563 family transposase -
  C2E46_RS01130 (C2E46_01140) comYA 197153..198124 (+) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  C2E46_RS01135 (C2E46_01145) comYB 198018..199061 (+) 1044 WP_223297804.1 competence type IV pilus assembly protein ComGB Machinery gene
  C2E46_RS01140 (C2E46_01150) comGC/cglC 199058..199387 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  C2E46_RS01145 (C2E46_01155) comYD 199362..199775 (+) 414 WP_000244259.1 competence type IV pilus minor pilin ComGD Machinery gene
  C2E46_RS01150 (C2E46_01160) comGE 199747..200046 (+) 300 WP_001872488.1 competence type IV pilus minor pilin ComGE -
  C2E46_RS01155 (C2E46_01165) comGF 200000..200461 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF -
  C2E46_RS01160 (C2E46_01170) comGG 200439..200810 (+) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG -
  C2E46_RS01165 (C2E46_01175) comYH 200925..201899 (+) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  C2E46_RS01170 (C2E46_01180) - 201931..203124 (+) 1194 WP_000047534.1 acetate kinase -
  C2E46_RS01175 (C2E46_01185) - 203083..204615 (-) 1533 WP_000468680.1 IS1182-like element IS1563 family transposase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15938.41 Da        Isoelectric Point: 9.9787

>NTDB_id=266883 C2E46_RS01145 WP_000244259.1 199362..199775(+) (comYD) [Streptococcus agalactiae strain YZ1605]
MVLRKFQVKAFTVLESLIVLSVVAFMTLVFSTSFNNIFRQVEETIFFISFEHLYRDTQKLSAFGQKKQTLTISHNYLENT
YERLYLPKTVKVVKSDTLAFDANGGNSSLAKIQFECYRKTVTYQLYIGSGNYRKKEN

Nucleotide


Download         Length: 414 bp        

>NTDB_id=266883 C2E46_RS01145 WP_000244259.1 199362..199775(+) (comYD) [Streptococcus agalactiae strain YZ1605]
ATGGTTCTCAGAAAATTTCAAGTTAAAGCATTTACTGTTTTGGAGAGCCTTATTGTATTATCAGTAGTGGCATTTATGAC
GTTAGTATTTTCAACATCATTTAATAATATTTTTAGGCAGGTTGAAGAAACAATTTTCTTCATATCCTTTGAACATCTTT
ATAGAGATACTCAGAAATTGAGTGCATTTGGTCAGAAGAAACAAACCCTTACAATCTCTCATAATTATCTCGAAAATACT
TATGAGAGACTTTATTTACCTAAAACTGTAAAAGTAGTCAAAAGTGACACACTTGCATTTGACGCTAATGGAGGGAATTC
AAGCTTGGCAAAAATTCAATTTGAATGTTATAGAAAAACTGTCACGTATCAATTATATATAGGAAGTGGTAATTATCGTA
AGAAAGAAAATTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus mutans UA140

51.515

96.35

0.496
  comYD Streptococcus mutans UA159

51.515

96.35

0.496
  comYD Streptococcus gordonii str. Challis substr. CH1

47.407

98.54

0.467
  comGD/cglD Streptococcus mitis NCTC 12261

41.045

97.81

0.401
  comGD/cglD Streptococcus pneumoniae TIGR4

43.307

92.701

0.401
  comGD/cglD Streptococcus mitis SK321

43.307

92.701

0.401
  comGD/cglD Streptococcus pneumoniae Rx1

42.52

92.701

0.394
  comGD/cglD Streptococcus pneumoniae D39

42.52

92.701

0.394
  comGD/cglD Streptococcus pneumoniae R6

42.52

92.701

0.394

Multiple sequence alignment