Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RK63_RS00985 Genome accession   NZ_CP026076
Coordinates   143992..144462 (-) Length   156 a.a.
NCBI ID   WP_000934753.1    Uniprot ID   A0A1S5YP95
Organism   Staphylococcus aureus strain FDAARGOS_4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 138992..149462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK63_RS00915 (RK63_000915) - 139223..139423 (-) 201 WP_000265043.1 DUF1514 family protein -
  RK63_RS00920 (RK63_000920) - 139423..139572 (-) 150 WP_000595265.1 transcriptional activator RinB -
  RK63_RS00925 (RK63_000925) - 139569..139955 (-) 387 WP_000592207.1 hypothetical protein -
  RK63_RS00930 (RK63_000930) - 139952..140158 (-) 207 WP_000195803.1 DUF1381 domain-containing protein -
  RK63_RS00935 (RK63_000935) - 140155..140400 (-) 246 WP_001282074.1 hypothetical protein -
  RK63_RS00940 (RK63_000940) - 140437..140970 (-) 534 WP_000181819.1 dUTP pyrophosphatase -
  RK63_RS00945 (RK63_000945) - 140963..141205 (-) 243 WP_000700108.1 hypothetical protein -
  RK63_RS00950 (RK63_000950) - 141195..141431 (-) 237 WP_001065101.1 DUF1024 family protein -
  RK63_RS00955 (RK63_000955) - 141424..141795 (-) 372 WP_001549172.1 hypothetical protein -
  RK63_RS00960 (RK63_000960) - 141804..142046 (-) 243 WP_000131383.1 phi PVL orf 51-like protein -
  RK63_RS00965 (RK63_000965) - 142050..142418 (-) 369 WP_000101288.1 SA1788 family PVL leukocidin-associated protein -
  RK63_RS00970 (RK63_000970) - 142431..142835 (-) 405 WP_000401977.1 RusA family crossover junction endodeoxyribonuclease -
  RK63_RS00975 (RK63_000975) - 142844..143062 (-) 219 WP_000338530.1 hypothetical protein -
  RK63_RS00980 (RK63_000980) - 143069..143962 (-) 894 WP_000148333.1 DnaD domain-containing protein -
  RK63_RS00985 (RK63_000985) ssbA 143992..144462 (-) 471 WP_000934753.1 single-stranded DNA-binding protein Machinery gene
  RK63_RS00990 (RK63_000990) - 144463..145080 (-) 618 WP_071665632.1 MBL fold metallo-hydrolase -
  RK63_RS00995 (RK63_000995) - 145161..146081 (-) 921 WP_000138475.1 recombinase RecT -
  RK63_RS01000 (RK63_001000) - 146083..148026 (-) 1944 WP_000700561.1 AAA family ATPase -
  RK63_RS01005 (RK63_001005) - 148035..148298 (-) 264 WP_001205732.1 hypothetical protein -
  RK63_RS01010 (RK63_001010) - 148307..148567 (-) 261 WP_000291513.1 DUF1108 family protein -
  RK63_RS01015 (RK63_001015) - 148548..148867 (-) 320 Protein_162 DUF2482 family protein -
  RK63_RS01020 (RK63_001020) - 148962..149123 (-) 162 WP_001285960.1 DUF1270 domain-containing protein -
  RK63_RS01025 (RK63_001025) - 149120..149440 (-) 321 WP_001120197.1 DUF771 domain-containing protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17668.55 Da        Isoelectric Point: 5.2672

>NTDB_id=266712 RK63_RS00985 WP_000934753.1 143992..144462(-) (ssbA) [Staphylococcus aureus strain FDAARGOS_4]
MLNRTILVGRLTRDPELRTTQNGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=266712 RK63_RS00985 WP_000934753.1 143992..144462(-) (ssbA) [Staphylococcus aureus strain FDAARGOS_4]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAATGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGTACATTTACAAATGCACAAGGCGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.497

100

0.641
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.545
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

33.333

100

0.378
  ssb Neisseria meningitidis MC58

33.526

100

0.372
  ssb Neisseria gonorrhoeae MS11

33.526

100

0.372
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.5

76.923

0.365
  ssbB/cilA Streptococcus mitis NCTC 12261

47.5

76.923

0.365

Multiple sequence alignment