Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RK51_RS02410 Genome accession   NZ_CP026041
Coordinates   472823..473935 (-) Length   370 a.a.
NCBI ID   WP_005497416.1    Uniprot ID   A0A249WAF7
Organism   Vibrio parahaemolyticus strain FDAARGOS_51     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 467823..478935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RK51_RS02380 (RK51_002380) hemF 468284..469201 (-) 918 WP_005461426.1 oxygen-dependent coproporphyrinogen oxidase -
  RK51_RS02385 (RK51_002385) - 469249..469806 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  RK51_RS02390 (RK51_002390) purE 470006..470491 (+) 486 WP_005497410.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  RK51_RS02395 (RK51_002395) - 470496..471629 (+) 1134 WP_005497411.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  RK51_RS02400 (RK51_002400) - 471711..472262 (-) 552 WP_021447902.1 type I DNA topoisomerase -
  RK51_RS02405 (RK51_002405) - 472341..472820 (-) 480 WP_005461440.1 DUF494 family protein -
  RK51_RS02410 (RK51_002410) dprA 472823..473935 (-) 1113 WP_005497416.1 DNA-processing protein DprA Machinery gene
  RK51_RS02415 (RK51_002415) - 473919..475013 (-) 1095 WP_005497418.1 LysM peptidoglycan-binding domain-containing protein -
  RK51_RS02420 (RK51_002420) def 475152..475670 (+) 519 WP_005461416.1 peptide deformylase -
  RK51_RS02425 (RK51_002425) fmt 475704..476651 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  RK51_RS02430 (RK51_002430) rsmB 476732..478015 (+) 1284 WP_005497420.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39927.55 Da        Isoelectric Point: 6.4133

>NTDB_id=265955 RK51_RS02410 WP_005497416.1 472823..473935(-) (dprA) [Vibrio parahaemolyticus strain FDAARGOS_51]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRSLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVREVMMQLLELELSGHVVAVSGGYIQKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=265955 RK51_RS02410 WP_005497416.1 472823..473935(-) (dprA) [Vibrio parahaemolyticus strain FDAARGOS_51]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCAGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTTGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAATTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCC
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTAGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAATTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCCAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACTTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCGAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCAAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A249WAF7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.054

100

0.841
  dprA Vibrio cholerae strain A1552

58.108

100

0.581
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Haemophilus influenzae Rd KW20

46.291

91.081

0.422
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

38.462

100

0.405
  dprA Neisseria meningitidis MC58

38.462

100

0.405
  dprA Neisseria gonorrhoeae MS11

36.598

100

0.384
  dprA Neisseria gonorrhoeae strain FA1090

36.34

100

0.381

Multiple sequence alignment