Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   DXX82_RS04850 Genome accession   NZ_CP031477
Coordinates   1006881..1007384 (-) Length   167 a.a.
NCBI ID   WP_115911787.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M27794     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1001881..1012384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXX82_RS04830 - 1002077..1003453 (+) 1377 WP_115911779.1 tyrosine phenol-lyase -
  DXX82_RS04835 - 1003616..1004830 (+) 1215 WP_115911781.1 aromatic amino acid transporter -
  DXX82_RS04840 - 1004890..1005567 (-) 678 WP_115911783.1 PAS domain-containing protein -
  DXX82_RS04845 purT 1005690..1006871 (-) 1182 WP_115911785.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  DXX82_RS04850 luxS 1006881..1007384 (-) 504 WP_115911787.1 S-ribosylhomocysteine lyase Regulator
  DXX82_RS04855 - 1007641..1008120 (-) 480 WP_115911789.1 YqaA family protein -
  DXX82_RS04860 - 1008120..1008719 (-) 600 WP_049364266.1 beta-phosphoglucomutase family hydrolase -
  DXX82_RS04865 - 1008831..1009196 (+) 366 WP_070868171.1 PRD domain-containing protein -
  DXX82_RS04870 ppx 1009219..1010763 (-) 1545 WP_115911791.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18812.47 Da        Isoelectric Point: 5.0073

>NTDB_id=265955 DXX82_RS04850 WP_115911787.1 1006881..1007384(-) (luxS) [Haemophilus parainfluenzae strain M27794]
MPLLDSFKVDHTRMNAPAVRVAKTMRTPKGDDITVFDLRFCIPNKEILPPKGIHTLEHLFAGFMRDHLNNDNVEIIDISP
MGCRTGFYMSLIGTPNEQQVAGAWLASMKDILTVQDQNQIPELNEYQCGTYTEHSLEEAHEIAKNVIARGVGINKNDDLT
LDESFLK

Nucleotide


Download         Length: 504 bp        

>NTDB_id=265955 DXX82_RS04850 WP_115911787.1 1006881..1007384(-) (luxS) [Haemophilus parainfluenzae strain M27794]
ATGCCATTACTCGACAGTTTTAAAGTGGATCACACCCGTATGAACGCACCTGCCGTGCGTGTAGCCAAAACCATGCGTAC
CCCAAAGGGCGATGACATCACTGTTTTTGATCTTCGTTTTTGCATCCCAAACAAAGAAATTCTCCCACCAAAAGGGATTC
ACACCCTTGAGCATTTATTTGCGGGCTTCATGCGTGACCATTTAAACAATGACAATGTAGAAATCATCGATATCTCCCCA
ATGGGCTGCCGCACAGGTTTTTACATGTCATTAATTGGCACACCAAACGAGCAACAAGTGGCTGGTGCATGGTTAGCTTC
CATGAAAGATATTTTAACCGTGCAAGATCAAAACCAAATTCCTGAATTAAACGAATACCAATGTGGGACTTACACCGAGC
ATTCTTTAGAAGAAGCACATGAAATTGCTAAAAATGTGATTGCTCGCGGTGTGGGGATTAATAAAAATGATGATTTAACA
CTTGATGAATCTTTCTTAAAATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

77.108

99.401

0.766

Multiple sequence alignment