Detailed information NTG0026551

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: LACR_RS02120
• Genome accession: NC_008527
• Coordinates: 411562..411951 (+)
• Length: 129 a.a.
• NCBI ID: WP_011675463.1
• Uniprot ID: -
• Organism: Lactococcus cremoris subsp. cremoris SK11
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	411562..421345	411562..411951	within	0

Gene organization within MGE regions

Location: 411562..421345

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LACR_RS02120 (LACR_0438)	ssbB	411562..411951 (+)	390	WP_011675463.1	single-stranded DNA-binding protein	Machinery gene
LACR_RS02125 (LACR_0439)	groES	412070..412354 (+)	285	WP_011675464.1	co-chaperone GroES	-
LACR_RS02130 (LACR_0440)	groL	412441..414069 (+)	1629	WP_011675465.1	chaperonin GroEL	-
LACR_RS02135 (LACR_0441)	-	414121..414933 (-)	813	WP_011675466.1	MBL fold metallo-hydrolase	-
LACR_RS02145 (LACR_0443)	-	415123..416550 (-)	1428	WP_011675468.1	cell wall metabolism sensor histidine kinase WalK	-
LACR_RS02150 (LACR_0444)	yycF	416543..417244 (-)	702	WP_003131580.1	response regulator YycF	-
LACR_RS02155 (LACR_0445)	tmk	417422..418057 (+)	636	WP_011675469.1	dTMP kinase	-
LACR_RS02160 (LACR_0446)	-	418190..419050 (+)	861	WP_011675470.1	DNA polymerase III subunit delta'	-
LACR_RS02165 (LACR_0447)	ricT	419100..419882 (+)	783	WP_011675471.1	stage 0 sporulation family protein	-
LACR_RS02170 (LACR_0448)	yabA	419875..420201 (+)	327	WP_011675472.1	DNA replication initiation control protein YabA	-
LACR_RS02175 (LACR_0449)	rsmI	420201..421076 (+)	876	WP_011675473.1	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	-
LACR_RS02180 (LACR_0450)	-	421154..421345 (-)	192	WP_011675474.1	hypothetical protein	-

Sequence

Protein

• Length: 129 a.a.
• Molecular weight: 14650.71 Da
• Isoelectric Point: 6.4793

>NTDB_id=26551 LACR_RS02120 WP_011675463.1 411562..411951(+) (ssbB) [Lactococcus cremoris subsp. cremoris SK11]
MNKTMLIGHLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIILWGKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHCITEILGLSYDLLESRATLALRESAVNFEELLLEADELPF

Nucleotide

• Length: 390 bp

>NTDB_id=26551 LACR_RS02120 WP_011675463.1 411562..411951(+) (ssbB) [Lactococcus cremoris subsp. cremoris SK11]
ATGAATAAAACCATGTTGATTGGTCATTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTTTATGGG
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTGTATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAATTTTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-95)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Lactococcus lactis subsp. cremoris KW2	96.899	100	0.969
ssbB	Streptococcus sobrinus strain NIDR 6715-7	60	100	0.605
ssbB/cilA	Streptococcus pneumoniae TIGR4	56.154	100	0.566
ssbB/cilA	Streptococcus pneumoniae Rx1	55.385	100	0.558
ssbB/cilA	Streptococcus pneumoniae D39	55.385	100	0.558
ssbB/cilA	Streptococcus pneumoniae R6	55.385	100	0.558
ssbB/cilA	Streptococcus mitis NCTC 12261	55.385	100	0.558
ssbB/cilA	Streptococcus mitis SK321	55.385	100	0.558
ssbA	Streptococcus mutans UA159	55.385	100	0.558